BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

220 related articles for article (PubMed ID: 15324886)

  • 1. GAsDock: a new approach for rapid flexible docking based on an improved multi-population genetic algorithm.
    Li H; Li C; Gui C; Luo X; Chen K; Shen J; Wang X; Jiang H
    Bioorg Med Chem Lett; 2004 Sep; 14(18):4671-6. PubMed ID: 15324886
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine.
    Jain AN
    J Med Chem; 2003 Feb; 46(4):499-511. PubMed ID: 12570372
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A pharmacophore docking algorithm and its application to the cross-docking of 18 HIV-NNRTI's in their binding pockets.
    Daeyaert F; de Jonge M; Heeres J; Koymans L; Lewi P; Vinkers MH; Janssen PA
    Proteins; 2004 Feb; 54(3):526-33. PubMed ID: 14748000
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy.
    Erickson JA; Jalaie M; Robertson DH; Lewis RA; Vieth M
    J Med Chem; 2004 Jan; 47(1):45-55. PubMed ID: 14695819
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 7. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V; Günther R
    Chem Biol Drug Des; 2007 Dec; 70(6):475-84. PubMed ID: 17986206
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation of docking performance: comparative data on docking algorithms.
    Kontoyianni M; McClellan LM; Sokol GS
    J Med Chem; 2004 Jan; 47(3):558-65. PubMed ID: 14736237
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automated docking of highly flexible ligands by genetic algorithms: a critical assessment.
    Cecchini M; Kolb P; Majeux N; Caflisch A
    J Comput Chem; 2004 Feb; 25(3):412-22. PubMed ID: 14696075
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SODOCK: swarm optimization for highly flexible protein-ligand docking.
    Chen HM; Liu BF; Huang HL; Hwang SF; Ho SY
    J Comput Chem; 2007 Jan; 28(2):612-23. PubMed ID: 17186483
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SDOCKER: a method utilizing existing X-ray structures to improve docking accuracy.
    Wu G; Vieth M
    J Med Chem; 2004 Jun; 47(12):3142-8. PubMed ID: 15163194
    [TBL] [Abstract][Full Text] [Related]  

  • 14. EADock: docking of small molecules into protein active sites with a multiobjective evolutionary optimization.
    Grosdidier A; Zoete V; Michielin O
    Proteins; 2007 Jun; 67(4):1010-25. PubMed ID: 17380512
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Binding mode prediction of cytochrome p450 and thymidine kinase protein-ligand complexes by consideration of water and rescoring in automated docking.
    de Graaf C; Pospisil P; Pos W; Folkers G; Vermeulen NP
    J Med Chem; 2005 Apr; 48(7):2308-18. PubMed ID: 15801824
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multiple active site corrections for docking and virtual screening.
    Vigers GP; Rizzi JP
    J Med Chem; 2004 Jan; 47(1):80-9. PubMed ID: 14695822
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
    Pei J; Wang Q; Liu Z; Li Q; Yang K; Lai L
    Proteins; 2006 Mar; 62(4):934-46. PubMed ID: 16395666
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Lead finder: an approach to improve accuracy of protein-ligand docking, binding energy estimation, and virtual screening.
    Stroganov OV; Novikov FN; Stroylov VS; Kulkov V; Chilov GG
    J Chem Inf Model; 2008 Dec; 48(12):2371-85. PubMed ID: 19007114
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.
    Antes I
    Proteins; 2010 Apr; 78(5):1084-104. PubMed ID: 20017216
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Docking ligands into flexible and solvated macromolecules. 1. Development and validation of FITTED 1.0.
    Corbeil CR; Englebienne P; Moitessier N
    J Chem Inf Model; 2007; 47(2):435-49. PubMed ID: 17305329
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.