These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

128 related articles for article (PubMed ID: 15326603)

  • 1. Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods.
    Ohlson T; Wallner B; Elofsson A
    Proteins; 2004 Oct; 57(1):188-97. PubMed ID: 15326603
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein homology detection and fold inference through multiple alignment entropy profiles.
    Sánchez-Flores A; Pérez-Rueda E; Segovia L
    Proteins; 2008 Jan; 70(1):248-56. PubMed ID: 17671981
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 4. On single and multiple models of protein families for the detection of remote sequence relationships.
    Casbon JA; Saqi MA
    BMC Bioinformatics; 2006 Jan; 7():48. PubMed ID: 16448555
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Do aligned sequences share the same fold?
    Abagyan RA; Batalov S
    J Mol Biol; 1997 Oct; 273(1):355-68. PubMed ID: 9367768
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
    Poleksic A; Fienup M
    Bioinformatics; 2008 May; 24(9):1145-53. PubMed ID: 18337259
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Sequence comparison and protein structure prediction.
    Dunbrack RL
    Curr Opin Struct Biol; 2006 Jun; 16(3):374-84. PubMed ID: 16713709
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH; Huang H; Kihara D
    Proteins; 2006 Aug; 64(3):587-600. PubMed ID: 16799934
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.
    Wang C; Yan RX; Wang XF; Si JN; Zhang Z
    Comput Biol Chem; 2011 Oct; 35(5):308-18. PubMed ID: 22000802
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Incremental window-based protein sequence alignment algorithms.
    Rangwala H; Karypis G
    Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    Kundrotas PJ; Lensink MF; Alexov E
    Int J Biol Macromol; 2008 Aug; 43(2):198-208. PubMed ID: 18572239
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Improving sequence-based fold recognition by using 3D model quality assessment.
    Pettitt CS; McGuffin LJ; Jones DT
    Bioinformatics; 2005 Sep; 21(17):3509-15. PubMed ID: 15955780
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Using evolutionary information for the query and target improves fold recognition.
    Wallner B; Fang H; Ohlson T; Frey-Skött J; Elofsson A
    Proteins; 2004 Feb; 54(2):342-50. PubMed ID: 14696196
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Stochastic pairwise alignments and scoring methods for comparative protein structure modeling.
    Marko AC; Stafford K; Wymore T
    J Chem Inf Model; 2007; 47(3):1263-70. PubMed ID: 17391002
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of sequence alignments of distantly related sequence pairs with respect to structural similarity.
    Gürler A; Knapp EW
    Genome Inform; 2007; 18():183-91. PubMed ID: 18546486
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Estimating quality of template-based protein models by alignment stability.
    Chen H; Kihara D
    Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
    Srivastava PK; Desai DK; Nandi S; Lynn AM
    BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sequence and hydropathy profile analysis of two classes of secondary transporters.
    Lolkema JS; Slotboom DJ
    Mol Membr Biol; 2005; 22(3):177-89. PubMed ID: 16096261
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Scoring profile-to-profile sequence alignments.
    Wang G; Dunbrack RL
    Protein Sci; 2004 Jun; 13(6):1612-26. PubMed ID: 15152092
    [TBL] [Abstract][Full Text] [Related]  

  • 20. STRUCTFAST: protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring.
    Debe DA; Danzer JF; Goddard WA; Poleksic A
    Proteins; 2006 Sep; 64(4):960-7. PubMed ID: 16786595
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.