These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 15353359)

  • 1. The protein folding problem: global optimization of the force fields.
    Scheraga HA; Liwo A; Oldziej S; Czaplewski C; Pillardy J; Ripoll DR; Vila JA; Kazmierkiewicz R; Saunders JA; Arnautova YA; Jagielska A; Chinchio M; Nanias M
    Front Biosci; 2004 Sep; 9():3296-323. PubMed ID: 15353359
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins.
    Liwo A; Khalili M; Czaplewski C; Kalinowski S; Ołdziej S; Wachucik K; Scheraga HA
    J Phys Chem B; 2007 Jan; 111(1):260-85. PubMed ID: 17201450
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics with the united-residue model of polypeptide chains. II. Langevin and Berendsen-bath dynamics and tests on model alpha-helical systems.
    Khalili M; Liwo A; Jagielska A; Scheraga HA
    J Phys Chem B; 2005 Jul; 109(28):13798-810. PubMed ID: 16852728
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A computational pathway for bracketing native-like structures fo small alpha helical globular proteins.
    Narang P; Bhushan K; Bose S; Jayaram B
    Phys Chem Chem Phys; 2005 Jun; 7(11):2364-75. PubMed ID: 19785123
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Optimum folding pathways for growing protein chains.
    Senturk S; Baday S; Arkun Y; Erman B
    Phys Biol; 2007 Nov; 4(4):305-16. PubMed ID: 18185008
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Zhang Y; Kolinski A; Skolnick J
    Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains.
    Liwo A; Khalili M; Scheraga HA
    Proc Natl Acad Sci U S A; 2005 Feb; 102(7):2362-7. PubMed ID: 15677316
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem.
    Shmygelska A; Hoos HH
    BMC Bioinformatics; 2005 Feb; 6():30. PubMed ID: 15710037
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: assessment in two blind tests.
    Ołdziej S; Czaplewski C; Liwo A; Chinchio M; Nanias M; Vila JA; Khalili M; Arnautova YA; Jagielska A; Makowski M; Schafroth HD; Kaźmierkiewicz R; Ripoll DR; Pillardy J; Saunders JA; Kang YK; Gibson KD; Scheraga HA
    Proc Natl Acad Sci U S A; 2005 May; 102(21):7547-52. PubMed ID: 15894609
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Monte Carlo studies of folding, dynamics, and stability in alpha-helices.
    Shental-Bechor D; Kirca S; Ben-Tal N; Haliloglu T
    Biophys J; 2005 Apr; 88(4):2391-402. PubMed ID: 15653741
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Navigation and analysis of the energy landscape of small proteins using the activation-relaxation technique.
    Mousseau N; Derreumaux P; Gilbert G
    Phys Biol; 2005 Nov; 2(4):S101-7. PubMed ID: 16280615
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ab initio protein structure prediction using physicochemical potentials and a simplified off-lattice model.
    Gibbs N; Clarke AR; Sessions RB
    Proteins; 2001 May; 43(2):186-202. PubMed ID: 11276088
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Contact-assisted protein structure modeling by global optimization in CASP11.
    Joo K; Joung I; Cheng Q; Lee SJ; Lee J
    Proteins; 2016 Sep; 84 Suppl 1():189-99. PubMed ID: 26677100
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Global optimization and folding pathways of selected alpha-helical proteins.
    Carr JM; Wales DJ
    J Chem Phys; 2005 Dec; 123(23):234901. PubMed ID: 16392943
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein folding by motion planning.
    Thomas S; Song G; Amato NM
    Phys Biol; 2005 Nov; 2(4):S148-55. PubMed ID: 16280620
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Lattice neural network minimization. Application of neural network optimization for locating the global-minimum conformations of proteins.
    Rabow AA; Scheraga HA
    J Mol Biol; 1993 Aug; 232(4):1157-68. PubMed ID: 8371272
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of sequence-based and structure-based energy functions for the reversible folding of a peptide.
    Cavalli A; Vendruscolo M; Paci E
    Biophys J; 2005 May; 88(5):3158-66. PubMed ID: 15749768
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Folding small proteins via annealing stochastic approximation Monte Carlo.
    Cheon S; Liang F
    Biosystems; 2011 Sep; 105(3):243-9. PubMed ID: 21679746
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Folding of small proteins using a single continuous potential.
    Kim SY; Lee J; Lee J
    J Chem Phys; 2004 May; 120(17):8271-6. PubMed ID: 15267747
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
    Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.