218 related articles for article (PubMed ID: 15378533)
1. Biased fragment distribution in MC simulation of protein folding.
Martineau E; L'Heureux PJ; Gunn JR
J Comput Chem; 2004 Nov; 25(15):1895-903. PubMed ID: 15378533
[TBL] [Abstract][Full Text] [Related]
2. Local moves: an efficient algorithm for simulation of protein folding.
Elofsson A; Le Grand SM; Eisenberg D
Proteins; 1995 Sep; 23(1):73-82. PubMed ID: 8539252
[TBL] [Abstract][Full Text] [Related]
3. Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations.
Ulmschneider JP; Ulmschneider MB; Di Nola A
J Phys Chem B; 2006 Aug; 110(33):16733-42. PubMed ID: 16913813
[TBL] [Abstract][Full Text] [Related]
4. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.
Rossinsky E; Srebnik S
Biopolymers; 2005 Dec; 79(5):259-68. PubMed ID: 16134169
[TBL] [Abstract][Full Text] [Related]
5. Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
Kolinski A; Skolnick J
Proteins; 1994 Apr; 18(4):338-52. PubMed ID: 8208726
[TBL] [Abstract][Full Text] [Related]
6. Computer simulations of protein folding with a small number of distance restraints.
Sikorski A; Kolinski A; Skolnick J
Acta Biochim Pol; 2002; 49(3):683-92. PubMed ID: 12422238
[TBL] [Abstract][Full Text] [Related]
7. Study of the Villin headpiece folding dynamics by combining coarse-grained Monte Carlo evolution and all-atom molecular dynamics.
De Mori GM; Colombo G; Micheletti C
Proteins; 2005 Feb; 58(2):459-71. PubMed ID: 15521059
[TBL] [Abstract][Full Text] [Related]
8. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation.
Shimada J; Kussell EL; Shakhnovich EI
J Mol Biol; 2001 Apr; 308(1):79-95. PubMed ID: 11302709
[TBL] [Abstract][Full Text] [Related]
9. Folding simulations of small proteins.
Kim SY; Lee J; Lee J
Biophys Chem; 2005 Apr; 115(2-3):195-200. PubMed ID: 15752604
[TBL] [Abstract][Full Text] [Related]
10. Overcoming entropic barrier with coupled sampling at dual resolutions.
Lwin TZ; Luo R
J Chem Phys; 2005 Nov; 123(19):194904. PubMed ID: 16321110
[TBL] [Abstract][Full Text] [Related]
11. Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model.
Kolinski A; Skolnick J
Proteins; 1998 Sep; 32(4):475-94. PubMed ID: 9726417
[TBL] [Abstract][Full Text] [Related]
12. New Monte Carlo algorithms for protein folding.
Hansmann UH; Okamoto Y
Curr Opin Struct Biol; 1999 Apr; 9(2):177-83. PubMed ID: 10322208
[TBL] [Abstract][Full Text] [Related]
13. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin.
Mehler EL; Hassan SA; Kortagere S; Weinstein H
Proteins; 2006 Aug; 64(3):673-90. PubMed ID: 16729264
[TBL] [Abstract][Full Text] [Related]
14. Significance of conformational biases in Monte Carlo simulations of protein folding: lessons from Metropolis-Hastings approach.
Przytycka T
Proteins; 2004 Nov; 57(2):338-44. PubMed ID: 15340921
[TBL] [Abstract][Full Text] [Related]
15. Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations.
Okamoto Y
J Mol Graph Model; 2004 May; 22(5):425-39. PubMed ID: 15099838
[TBL] [Abstract][Full Text] [Related]
16. A new Hybrid Monte Carlo algorithm for protein potential function test and structure refinement.
Zhang H
Proteins; 1999 Mar; 34(4):464-71. PubMed ID: 10081959
[TBL] [Abstract][Full Text] [Related]
17. Genetic algorithms for protein folding simulations.
Unger R; Moult J
J Mol Biol; 1993 May; 231(1):75-81. PubMed ID: 8496967
[TBL] [Abstract][Full Text] [Related]
18. A knowledge-based move set for protein folding.
Chen WW; Yang JS; Shakhnovich EI
Proteins; 2007 Feb; 66(3):682-8. PubMed ID: 17143895
[TBL] [Abstract][Full Text] [Related]
19. Towards realistic description of collective motions in the lattice protein folding models.
Yesylevskyy SO; Demchenko AP
Biophys Chem; 2004 Apr; 109(1):17-40. PubMed ID: 15059657
[TBL] [Abstract][Full Text] [Related]
20. Fast protein structure prediction using Monte Carlo simulations with modal moves.
Carnevali P; Tóth G; Toubassi G; Meshkat SN
J Am Chem Soc; 2003 Nov; 125(47):14244-5. PubMed ID: 14624550
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
