These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 15382242)

  • 1. Remote homolog detection using local sequence-structure correlations.
    Hou Y; Hsu W; Lee ML; Bystroff C
    Proteins; 2004 Nov; 57(3):518-30. PubMed ID: 15382242
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.
    Bystroff C; Thorsson V; Baker D
    J Mol Biol; 2000 Aug; 301(1):173-90. PubMed ID: 10926500
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences.
    Chen YC; Lin YS; Lin CJ; Hwang JK
    Proteins; 2004 Jun; 55(4):1036-42. PubMed ID: 15146500
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.
    Shah AR; Oehmen CS; Harper J; Webb-Robertson BJ
    Comput Biol Chem; 2007 Apr; 31(2):138-42. PubMed ID: 17416337
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR; Oehmen CS; Webb-Robertson BJ
    Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of protein subcellular localization.
    Yu CS; Chen YC; Lu CH; Hwang JK
    Proteins; 2006 Aug; 64(3):643-51. PubMed ID: 16752418
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Remote homology detection using a kernel method that combines sequence and secondary-structure similarity scores.
    Wieser D; Niranjan M
    In Silico Biol; 2009; 9(3):89-103. PubMed ID: 19795568
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.
    Karchin R; Cline M; Mandel-Gutfreund Y; Karplus K
    Proteins; 2003 Jun; 51(4):504-14. PubMed ID: 12784210
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C; Pollastri G
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequence comparison and protein structure prediction.
    Dunbrack RL
    Curr Opin Struct Biol; 2006 Jun; 16(3):374-84. PubMed ID: 16713709
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sequence-based protein structure prediction using a reduced state-space hidden Markov model.
    Lampros C; Costas Papaloukas ; Exarchos TP; Yorgos Goletsis ; Fotiadis DI
    Comput Biol Med; 2007 Sep; 37(9):1211-24. PubMed ID: 17161834
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A feature vector integration approach for a generalized support vector machine pairwise homology algorithm.
    Webb-Robertson BJ; Oehmen CS; Shah AR
    Comput Biol Chem; 2008 Dec; 32(6):458-61. PubMed ID: 18722814
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The irredundant class method for remote homology detection of protein sequences.
    Comin M; Verzotto D
    J Comput Biol; 2011 Dec; 18(12):1819-29. PubMed ID: 21548811
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Enhanced protein fold recognition using a structural alphabet.
    Deschavanne P; Tufféry P
    Proteins; 2009 Jul; 76(1):129-37. PubMed ID: 19089985
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K; Kurgan L
    Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees.
    Oğul H; Mumcuoğlu EU
    Comput Biol Chem; 2006 Aug; 30(4):292-9. PubMed ID: 16880118
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein remote homology detection based on auto-cross covariance transformation.
    Liu X; Zhao L; Dong Q
    Comput Biol Med; 2011 Aug; 41(8):640-7. PubMed ID: 21664609
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Profile-based direct kernels for remote homology detection and fold recognition.
    Rangwala H; Karypis G
    Bioinformatics; 2005 Dec; 21(23):4239-47. PubMed ID: 16188929
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of pi-turns in proteins using PSI-BLAST profiles and secondary structure information.
    Wang Y; Xue ZD; Shi XH; Xu J
    Biochem Biophys Res Commun; 2006 Sep; 347(3):574-80. PubMed ID: 16844090
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.