154 related articles for article (PubMed ID: 15448184)
1. Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved.
Babenko VN; Krylov DM
Nucleic Acids Res; 2004; 32(17):5029-35. PubMed ID: 15448184
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV; Fedorova ND; Jackson JD; Jacobs AR; Krylov DM; Makarova KS; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Rogozin IB; Smirnov S; Sorokin AV; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA
Genome Biol; 2004; 5(2):R7. PubMed ID: 14759257
[TBL] [Abstract][Full Text] [Related]
3. The COG database: an updated version includes eukaryotes.
Tatusov RL; Fedorova ND; Jackson JD; Jacobs AR; Kiryutin B; Koonin EV; Krylov DM; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Smirnov S; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA
BMC Bioinformatics; 2003 Sep; 4():41. PubMed ID: 12969510
[TBL] [Abstract][Full Text] [Related]
4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Riechmann JL; Heard J; Martin G; Reuber L; Jiang C; Keddie J; Adam L; Pineda O; Ratcliffe OJ; Samaha RR; Creelman R; Pilgrim M; Broun P; Zhang JZ; Ghandehari D; Sherman BK; Yu G
Science; 2000 Dec; 290(5499):2105-10. PubMed ID: 11118137
[TBL] [Abstract][Full Text] [Related]
5. The role of lineage-specific gene family expansion in the evolution of eukaryotes.
Lespinet O; Wolf YI; Koonin EV; Aravind L
Genome Res; 2002 Jul; 12(7):1048-59. PubMed ID: 12097341
[TBL] [Abstract][Full Text] [Related]
6. Contribution of sponge genes to unravel the genome of the hypothetical ancestor of Metazoa (Urmetazoa).
Müller WE; Schröder HC; Skorokhod A; Bünz C; Müller IM; Grebenjuk VA
Gene; 2001 Oct; 276(1-2):161-73. PubMed ID: 11591483
[TBL] [Abstract][Full Text] [Related]
7. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.
Krylov DM; Wolf YI; Rogozin IB; Koonin EV
Genome Res; 2003 Oct; 13(10):2229-35. PubMed ID: 14525925
[TBL] [Abstract][Full Text] [Related]
8. Birth and death of duplicated genes in completely sequenced eukaryotes.
Wagner A
Trends Genet; 2001 May; 17(5):237-9. PubMed ID: 11335019
[TBL] [Abstract][Full Text] [Related]
9. Guanosine distribution and oxidation resistance in eight eukaryotic genomes.
Friedman KA; Heller A
J Am Chem Soc; 2004 Mar; 126(8):2368-71. PubMed ID: 14982441
[TBL] [Abstract][Full Text] [Related]
10. Birth and death of protein domains: a simple model of evolution explains power law behavior.
Karev GP; Wolf YI; Rzhetsky AY; Berezovskaya FS; Koonin EV
BMC Evol Biol; 2002 Oct; 2():18. PubMed ID: 12379152
[TBL] [Abstract][Full Text] [Related]
11. A general tendency for conservation of protein length across eukaryotic kingdoms.
Wang D; Hsieh M; Li WH
Mol Biol Evol; 2005 Jan; 22(1):142-7. PubMed ID: 15371528
[TBL] [Abstract][Full Text] [Related]
12. Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes.
Mushegian AR; Garey JR; Martin J; Liu LX
Genome Res; 1998 Jun; 8(6):590-8. PubMed ID: 9647634
[TBL] [Abstract][Full Text] [Related]
13. Evolution of secretin family GPCR members in the metazoa.
Cardoso JC; Pinto VC; Vieira FA; Clark MS; Power DM
BMC Evol Biol; 2006 Dec; 6():108. PubMed ID: 17166275
[TBL] [Abstract][Full Text] [Related]
14. Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals.
Danchin EG; Gouret P; Pontarotti P
BMC Evol Biol; 2006 Jan; 6():5. PubMed ID: 16420703
[TBL] [Abstract][Full Text] [Related]
15. Extent of gene duplication in the genomes of Drosophila, nematode, and yeast.
Gu Z; Cavalcanti A; Chen FC; Bouman P; Li WH
Mol Biol Evol; 2002 Mar; 19(3):256-62. PubMed ID: 11861885
[TBL] [Abstract][Full Text] [Related]
16. Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe.
Hiraoka Y; Kawamata K; Haraguchi T; Chikashige Y
Genes Cells; 2009 Apr; 14(4):499-509. PubMed ID: 19335619
[TBL] [Abstract][Full Text] [Related]
17. Preferential loss and gain of introns in 3' portions of genes suggests a reverse-transcription mechanism of intron insertion.
Sverdlov AV; Babenko VN; Rogozin IB; Koonin EV
Gene; 2004 Aug; 338(1):85-91. PubMed ID: 15302409
[TBL] [Abstract][Full Text] [Related]
18. Genomic gene clustering analysis of pathways in eukaryotes.
Lee JM; Sonnhammer EL
Genome Res; 2003 May; 13(5):875-82. PubMed ID: 12695325
[TBL] [Abstract][Full Text] [Related]
19. Similarities and differences in genome-wide expression data of six organisms.
Bergmann S; Ihmels J; Barkai N
PLoS Biol; 2004 Jan; 2(1):E9. PubMed ID: 14737187
[TBL] [Abstract][Full Text] [Related]
20. Accelerated molecular evolution of insect orthologues of ERG28/C14orf1: a link with ecdysteroid metabolism?
Veitia RA; Hurst LD
J Genet; 2001 Apr; 80(1):17-21. PubMed ID: 11910120
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]