These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

122 related articles for article (PubMed ID: 15479715)

  • 1. Improving conformational searches by geometric screening.
    Zhang M; White RA; Wang L; Goldman R; Kavraki L; Hassett B
    Bioinformatics; 2005 Mar; 21(5):624-30. PubMed ID: 15479715
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT; Jackson RM
    Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatic clustering of docking poses in virtual screening process using self-organizing map.
    Bouvier G; Evrard-Todeschi N; Girault JP; Bertho G
    Bioinformatics; 2010 Jan; 26(1):53-60. PubMed ID: 19910307
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Fully automated molecular mechanics based induced fit protein-ligand docking method.
    Koska J; Spassov VZ; Maynard AJ; Yan L; Austin N; Flook PK; Venkatachalam CM
    J Chem Inf Model; 2008 Oct; 48(10):1965-73. PubMed ID: 18816046
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CORCEMA refinement of the bound ligand conformation within the protein binding pocket in reversibly forming weak complexes using STD-NMR intensities.
    Jayalakshmi V; Rama Krishna N
    J Magn Reson; 2004 May; 168(1):36-45. PubMed ID: 15082247
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rational automatic search method for stable docking models of protein and ligand.
    Mizutani MY; Tomioka N; Itai A
    J Mol Biol; 1994 Oct; 243(2):310-26. PubMed ID: 7932757
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Macromolecular recognition.
    Deremble C; Lavery R
    Curr Opin Struct Biol; 2005 Apr; 15(2):171-5. PubMed ID: 15837175
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Inherent limitations in protein-protein docking procedures.
    Kowalsman N; Eisenstein M
    Bioinformatics; 2007 Feb; 23(4):421-6. PubMed ID: 17040920
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Flexible protein-protein docking based on Best-First search algorithm.
    Noy E; Goldblum A
    J Comput Chem; 2010 Jul; 31(9):1929-43. PubMed ID: 20087902
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Geometric algorithms for the conformational analysis of long protein loops.
    Cortés J; Siméon T; Remaud-Siméon M; Tran V
    J Comput Chem; 2004 May; 25(7):956-67. PubMed ID: 15027107
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.
    Ma XH; Li CH; Shen LZ; Gong XQ; Chen WZ; Wang CX
    Proteins; 2005 Aug; 60(2):319-23. PubMed ID: 15981260
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A distance geometry heuristic for expanding the range of geometries sampled during conformational search.
    Izrailev S; Zhu F; Agrafiotis DK
    J Comput Chem; 2006 Dec; 27(16):1962-9. PubMed ID: 17031897
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An anchor-dependent molecular docking process for docking small flexible molecules into rigid protein receptors.
    Lin TH; Lin GL
    J Chem Inf Model; 2008 Aug; 48(8):1638-55. PubMed ID: 18642894
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
    Morris RJ; Najmanovich RJ; Kahraman A; Thornton JM
    Bioinformatics; 2005 May; 21(10):2347-55. PubMed ID: 15728116
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.
    Kämper A; Apostolakis J; Rarey M; Marian CM; Lengauer T
    J Chem Inf Model; 2006; 46(2):903-11. PubMed ID: 16563022
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.
    Camacho CJ
    Proteins; 2005 Aug; 60(2):245-51. PubMed ID: 15981253
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A new protein-protein docking scoring function based on interface residue properties.
    Bernauer J; Azé J; Janin J; Poupon A
    Bioinformatics; 2007 Mar; 23(5):555-62. PubMed ID: 17237048
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein complexes: structure prediction challenges for the 21st century.
    Aloy P; Pichaud M; Russell RB
    Curr Opin Struct Biol; 2005 Feb; 15(1):15-22. PubMed ID: 15718128
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.