These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

220 related articles for article (PubMed ID: 15495260)

  • 1. Optimal docking area: a new method for predicting protein-protein interaction sites.
    Fernandez-Recio J; Totrov M; Skorodumov C; Abagyan R
    Proteins; 2005 Jan; 58(1):134-43. PubMed ID: 15495260
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis.
    Fernández D; Vendrell J; Avilés FX; Fernández-Recio J
    Proteins; 2007 Jul; 68(1):131-44. PubMed ID: 17407161
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 4. WHISCY: what information does surface conservation yield? Application to data-driven docking.
    de Vries SJ; van Dijk AD; Bonvin AM
    Proteins; 2006 May; 63(3):479-89. PubMed ID: 16450362
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT; Jackson RM
    Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Examination of shape complementarity in docking of unbound proteins.
    Norel R; Petrey D; Wolfson HJ; Nussinov R
    Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
    Günther S; May P; Hoppe A; Frömmel C; Preissner R
    Proteins; 2007 Dec; 69(4):839-44. PubMed ID: 17803236
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A continuum model for protein-protein interactions: application to the docking problem.
    Jackson RM; Sternberg MJ
    J Mol Biol; 1995 Jul; 250(2):258-75. PubMed ID: 7541840
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
    Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
    Zhang C; Liu S; Zhou Y
    Proteins; 2005 Aug; 60(2):314-8. PubMed ID: 15981255
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Present and future challenges and limitations in protein-protein docking.
    Pons C; Grosdidier S; Solernou A; Pérez-Cano L; Fernández-Recio J
    Proteins; 2010 Jan; 78(1):95-108. PubMed ID: 19731373
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Development and testing of an automated approach to protein docking.
    Tovchigrechko A; Vakser IA
    Proteins; 2005 Aug; 60(2):296-301. PubMed ID: 15981259
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Complex-type-dependent scoring functions in protein-protein docking.
    Li CH; Ma XH; Shen LZ; Chang S; Chen WZ; Wang CX
    Biophys Chem; 2007 Aug; 129(1):1-10. PubMed ID: 17540496
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10.
    Berchanski A; Segal D; Eisenstein M
    Proteins; 2005 Aug; 60(2):202-6. PubMed ID: 15981250
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues.
    Terashi G; Takeda-Shitaka M; Takaya D; Komatsu K; Umeyama H
    Proteins; 2005 Aug; 60(2):289-95. PubMed ID: 15981245
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Classification of protein complexes based on docking difficulty.
    Vajda S
    Proteins; 2005 Aug; 60(2):176-80. PubMed ID: 15981248
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Docking essential dynamics eigenstructures.
    Mustard D; Ritchie DW
    Proteins; 2005 Aug; 60(2):269-74. PubMed ID: 15981272
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.