These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
228 related articles for article (PubMed ID: 15509603)
1. PDBML: the representation of archival macromolecular structure data in XML. Westbrook J; Ito N; Nakamura H; Henrick K; Berman HM Bioinformatics; 2005 Apr; 21(7):988-92. PubMed ID: 15509603 [TBL] [Abstract][Full Text] [Related]
2. An extensible automated protein annotation tool: standardizing input and output using validated XML. Deevi SV; Martin AC Bioinformatics; 2006 Feb; 22(3):291-6. PubMed ID: 16339285 [TBL] [Abstract][Full Text] [Related]
7. PDB file parser and structure class implemented in Python. Hamelryck T; Manderick B Bioinformatics; 2003 Nov; 19(17):2308-10. PubMed ID: 14630660 [TBL] [Abstract][Full Text] [Related]
8. PDBSprotEC: a Web-accessible database linking PDB chains to EC numbers via SwissProt. Martin AC Bioinformatics; 2004 Apr; 20(6):986-8. PubMed ID: 14764547 [TBL] [Abstract][Full Text] [Related]
9. CellML2SBML: conversion of CellML into SBML. Schilstra MJ; Li L; Matthews J; Finney A; Hucka M; Le Novère N Bioinformatics; 2006 Apr; 22(8):1018-20. PubMed ID: 16473867 [TBL] [Abstract][Full Text] [Related]
10. The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries. Fischer D; Paś J; Rychlewski L Bioinformatics; 2004 Oct; 20(15):2482-4. PubMed ID: 15073011 [TBL] [Abstract][Full Text] [Related]
11. DisProt: a database of protein disorder. Vucetic S; Obradovic Z; Vacic V; Radivojac P; Peng K; Iakoucheva LM; Cortese MS; Lawson JD; Brown CJ; Sikes JG; Newton CD; Dunker AK Bioinformatics; 2005 Jan; 21(1):137-40. PubMed ID: 15310560 [TBL] [Abstract][Full Text] [Related]
12. XML for data representation and model specification in neuroscience. Crook SM; Howell FW Methods Mol Biol; 2007; 401():53-66. PubMed ID: 18368360 [TBL] [Abstract][Full Text] [Related]
14. CisML: an XML-based format for sequence motif detection software. Haverty PM; Weng Z Bioinformatics; 2004 Jul; 20(11):1815-7. PubMed ID: 15001475 [TBL] [Abstract][Full Text] [Related]
15. PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan. Kinjo AR; Yamashita R; Nakamura H Database (Oxford); 2010 Aug; 2010():baq021. PubMed ID: 20798081 [TBL] [Abstract][Full Text] [Related]
16. UniSave: the UniProtKB sequence/annotation version database. Leinonen R; Nardone F; Zhu W; Apweiler R Bioinformatics; 2006 May; 22(10):1284-5. PubMed ID: 16551660 [TBL] [Abstract][Full Text] [Related]
17. BiopLib and BiopTools--a C programming library and toolset for manipulating protein structure. Porter CT; Martin AC Bioinformatics; 2015 Dec; 31(24):4017-9. PubMed ID: 26323716 [TBL] [Abstract][Full Text] [Related]
18. The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structures. Kikuchi N; Kameyama A; Nakaya S; Ito H; Sato T; Shikanai T; Takahashi Y; Narimatsu H Bioinformatics; 2005 Apr; 21(8):1717-8. PubMed ID: 15564307 [TBL] [Abstract][Full Text] [Related]
19. ProtBuD: a database of biological unit structures of protein families and superfamilies. Xu Q; Canutescu A; Obradovic Z; Dunbrack RL Bioinformatics; 2006 Dec; 22(23):2876-82. PubMed ID: 17018535 [TBL] [Abstract][Full Text] [Related]