145 related articles for article (PubMed ID: 15517989)
1. Detection of pairwise residue proximity by covariation analysis for 3D-structure prediction of G-protein-coupled receptors.
Nemoto W; Imai T; Takahashi T; Kikuchi T; Fujita N
Protein J; 2004 Aug; 23(6):427-35. PubMed ID: 15517989
[TBL] [Abstract][Full Text] [Related]
2. Crystal structure of the ligand-free G-protein-coupled receptor opsin.
Park JH; Scheerer P; Hofmann KP; Choe HW; Ernst OP
Nature; 2008 Jul; 454(7201):183-7. PubMed ID: 18563085
[TBL] [Abstract][Full Text] [Related]
3. Prediction of interfaces for oligomerizations of G-protein coupled receptors.
Nemoto W; Toh H
Proteins; 2005 Feb; 58(3):644-60. PubMed ID: 15593372
[TBL] [Abstract][Full Text] [Related]
4. The opsins.
Terakita A
Genome Biol; 2005; 6(3):213. PubMed ID: 15774036
[TBL] [Abstract][Full Text] [Related]
5. Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions.
Madabushi S; Gross AK; Philippi A; Meng EC; Wensel TG; Lichtarge O
J Biol Chem; 2004 Feb; 279(9):8126-32. PubMed ID: 14660595
[TBL] [Abstract][Full Text] [Related]
6. Relevance of rhodopsin studies for GPCR activation.
Deupi X
Biochim Biophys Acta; 2014 May; 1837(5):674-82. PubMed ID: 24041646
[TBL] [Abstract][Full Text] [Related]
7. First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin.
Trabanino RJ; Hall SE; Vaidehi N; Floriano WB; Kam VW; Goddard WA
Biophys J; 2004 Apr; 86(4):1904-21. PubMed ID: 15041637
[TBL] [Abstract][Full Text] [Related]
8. X-ray structure breakthroughs in the GPCR transmembrane region.
Topiol S; Sabio M
Biochem Pharmacol; 2009 Jul; 78(1):11-20. PubMed ID: 19447219
[TBL] [Abstract][Full Text] [Related]
9. Statistical analysis and prediction of functional residues effective for GPCR-G-protein coupling selectivity.
Muramatsu T; Suwa M
Protein Eng Des Sel; 2006 Jun; 19(6):277-83. PubMed ID: 16565146
[TBL] [Abstract][Full Text] [Related]
10. Crystal structure of rhodopsin: a template for cone visual pigments and other G protein-coupled receptors.
Stenkamp RE; Filipek S; Driessen CA; Teller DC; Palczewski K
Biochim Biophys Acta; 2002 Oct; 1565(2):168-82. PubMed ID: 12409193
[TBL] [Abstract][Full Text] [Related]
11. Expanding GPCR homology model binding sites via a balloon potential: A molecular dynamics refinement approach.
Kimura SR; Tebben AJ; Langley DR
Proteins; 2008 Jun; 71(4):1919-29. PubMed ID: 18175323
[TBL] [Abstract][Full Text] [Related]
12. Agonist-induced conformational changes in bovine rhodopsin: insight into activation of G-protein-coupled receptors.
Bhattacharya S; Hall SE; Vaidehi N
J Mol Biol; 2008 Oct; 382(2):539-55. PubMed ID: 18638482
[TBL] [Abstract][Full Text] [Related]
13. Structure modeling of all identified G protein-coupled receptors in the human genome.
Zhang Y; Devries ME; Skolnick J
PLoS Comput Biol; 2006 Feb; 2(2):e13. PubMed ID: 16485037
[TBL] [Abstract][Full Text] [Related]
14. Comparative analysis of sequence covariation methods to mine evolutionary hubs: examples from selected GPCR families.
Pelé J; Moreau M; Abdi H; Rodien P; Castel H; Chabbert M
Proteins; 2014 Sep; 82(9):2141-56. PubMed ID: 24677372
[TBL] [Abstract][Full Text] [Related]
15. Improving homology modeling of G-protein coupled receptors through multiple-template derived conserved inter-residue interactions.
Chaudhari R; Heim AJ; Li Z
J Comput Aided Mol Des; 2015 May; 29(5):413-20. PubMed ID: 25503850
[TBL] [Abstract][Full Text] [Related]
16. New vistas in GPCR 3D structure prediction.
Rayan A
J Mol Model; 2010 Feb; 16(2):183-91. PubMed ID: 19551412
[TBL] [Abstract][Full Text] [Related]
17. Sequence, structure and ligand binding evolution of rhodopsin-like G protein-coupled receptors: a crystal structure-based phylogenetic analysis.
Wolf S; Grünewald S
PLoS One; 2015; 10(4):e0123533. PubMed ID: 25881057
[TBL] [Abstract][Full Text] [Related]
18. A Structural Framework for GPCR Chemogenomics: What's In a Residue Number?
Vass M; Kooistra AJ; Verhoeven S; Gloriam D; de Esch IJP; de Graaf C
Methods Mol Biol; 2018; 1705():73-113. PubMed ID: 29188559
[TBL] [Abstract][Full Text] [Related]
19. Quantification of structural distortions in the transmembrane helices of GPCRs.
Deupi X
Methods Mol Biol; 2012; 914():219-35. PubMed ID: 22976031
[TBL] [Abstract][Full Text] [Related]
20. Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
Larson SM; Di Nardo AA; Davidson AR
J Mol Biol; 2000 Oct; 303(3):433-46. PubMed ID: 11031119
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
