BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

511 related articles for article (PubMed ID: 15531601)

  • 1. Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.
    Yuan X; Bystroff C
    Bioinformatics; 2005 Apr; 21(7):1010-9. PubMed ID: 15531601
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
    Huang YM; Bystroff C
    Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D; Leo-Macias A; Ortiz AR
    Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED; Bourne PE
    BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FSSA: a novel method for identifying functional signatures from structural alignments.
    Wang K; Samudrala R
    Bioinformatics; 2005 Jul; 21(13):2969-77. PubMed ID: 15860561
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Vorolign--fast structural alignment using Voronoi contacts.
    Birzele F; Gewehr JE; Csaba G; Zimmer R
    Bioinformatics; 2007 Jan; 23(2):e205-11. PubMed ID: 17237093
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CLANS: a Java application for visualizing protein families based on pairwise similarity.
    Frickey T; Lupas A
    Bioinformatics; 2004 Dec; 20(18):3702-4. PubMed ID: 15284097
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
    Frenkel-Morgenstern M; Voet H; Pietrokovski S
    Bioinformatics; 2005 Jul; 21(13):2950-6. PubMed ID: 15870168
    [TBL] [Abstract][Full Text] [Related]  

  • 11. On the relationship between sequence and structure similarities in proteomics.
    Krissinel E
    Bioinformatics; 2007 Mar; 23(6):717-23. PubMed ID: 17242029
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multiple sequence threading: an analysis of alignment quality and stability.
    Taylor WR
    J Mol Biol; 1997 Jun; 269(5):902-43. PubMed ID: 9223650
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Multiple Alignment of protein structures and sequences for VMD.
    Eargle J; Wright D; Luthey-Schulten Z
    Bioinformatics; 2006 Feb; 22(4):504-6. PubMed ID: 16339280
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Searching for three-dimensional secondary structural patterns in proteins with ProSMoS.
    Shi S; Zhong Y; Majumdar I; Sri Krishna S; Grishin NV
    Bioinformatics; 2007 Jun; 23(11):1331-8. PubMed ID: 17384423
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CHORAL: a differential geometry approach to the prediction of the cores of protein structures.
    Montalvão RW; Smith RE; Lovell SC; Blundell TL
    Bioinformatics; 2005 Oct; 21(19):3719-25. PubMed ID: 16046494
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein secondary structure: entropy, correlations and prediction.
    Crooks GE; Brenner SE
    Bioinformatics; 2004 Jul; 20(10):1603-11. PubMed ID: 14988117
    [TBL] [Abstract][Full Text] [Related]  

  • 19. VISTAL--a new 2D visualization tool of protein 3D structural alignments.
    Kolodny R; Honig B
    Bioinformatics; 2006 Sep; 22(17):2166-7. PubMed ID: 16837525
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiple sequence alignments.
    Wallace IM; Blackshields G; Higgins DG
    Curr Opin Struct Biol; 2005 Jun; 15(3):261-6. PubMed ID: 15963889
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 26.