233 related articles for article (PubMed ID: 15531614)
1. An alternative model of amino acid replacement.
Crooks GE; Brenner SE
Bioinformatics; 2005 Apr; 21(7):975-80. PubMed ID: 15531614
[TBL] [Abstract][Full Text] [Related]
2. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.
Kahsay RY; Wang G; Gao G; Liao L; Dunbrack R
Bioinformatics; 2005 May; 21(10):2287-93. PubMed ID: 15797916
[TBL] [Abstract][Full Text] [Related]
3. Designing patterns for profile HMM search.
Sun Y; Buhler J
Bioinformatics; 2007 Jan; 23(2):e36-43. PubMed ID: 17237102
[TBL] [Abstract][Full Text] [Related]
4. Convergent Island Statistics: a fast method for determining local alignment score significance.
Poleksic A; Danzer JF; Hambly K; Debe DA
Bioinformatics; 2005 Jun; 21(12):2827-31. PubMed ID: 15817690
[TBL] [Abstract][Full Text] [Related]
5. Application of a simple likelihood ratio approximant to protein sequence classification.
Kaján L; Kertész-Farkas A; Franklin D; Ivanova N; Kocsor A; Pongor S
Bioinformatics; 2006 Dec; 22(23):2865-9. PubMed ID: 17090576
[TBL] [Abstract][Full Text] [Related]
6. Protein secondary structure: entropy, correlations and prediction.
Crooks GE; Brenner SE
Bioinformatics; 2004 Jul; 20(10):1603-11. PubMed ID: 14988117
[TBL] [Abstract][Full Text] [Related]
7. A metric model of amino acid substitution.
Xu W; Miranker DP
Bioinformatics; 2004 May; 20(8):1214-21. PubMed ID: 14871874
[TBL] [Abstract][Full Text] [Related]
8. An examination of the conservation of surface patch polarity for proteins.
Shanahan HP; Thornton JM
Bioinformatics; 2004 Sep; 20(14):2197-204. PubMed ID: 15073014
[TBL] [Abstract][Full Text] [Related]
9. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
10. Prediction of protein interdomain linker regions by a hidden Markov model.
Bae K; Mallick BK; Elsik CG
Bioinformatics; 2005 May; 21(10):2264-70. PubMed ID: 15746283
[TBL] [Abstract][Full Text] [Related]
11. Family specific rates of protein evolution.
Luz H; Vingron M
Bioinformatics; 2006 May; 22(10):1166-71. PubMed ID: 16510497
[TBL] [Abstract][Full Text] [Related]
12. A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.
Brooks DJ; Fresco JR; Singh M
Bioinformatics; 2004 Sep; 20(14):2251-7. PubMed ID: 15073018
[TBL] [Abstract][Full Text] [Related]
13. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
Scheeff ED; Bourne PE
BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
[TBL] [Abstract][Full Text] [Related]
14. On the relationship between sequence and structure similarities in proteomics.
Krissinel E
Bioinformatics; 2007 Mar; 23(6):717-23. PubMed ID: 17242029
[TBL] [Abstract][Full Text] [Related]
15. Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities.
Smith RE; Lovell SC; Burke DF; Montalvao RW; Blundell TL
Bioinformatics; 2007 May; 23(9):1099-105. PubMed ID: 17341496
[TBL] [Abstract][Full Text] [Related]
16. Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
Anand B; Gowri VS; Srinivasan N
Bioinformatics; 2005 Jun; 21(12):2821-6. PubMed ID: 15817691
[TBL] [Abstract][Full Text] [Related]
17. REVCOM: a robust Bayesian method for evolutionary rate estimation.
Bordner AJ; Abagyan R
Bioinformatics; 2005 May; 21(10):2315-21. PubMed ID: 15749694
[TBL] [Abstract][Full Text] [Related]
18. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes.
Chou KC
Bioinformatics; 2005 Jan; 21(1):10-9. PubMed ID: 15308540
[TBL] [Abstract][Full Text] [Related]
19. A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins.
Mihalek I; Res I; Lichtarge O
Bioinformatics; 2006 Jan; 22(2):149-56. PubMed ID: 16303797
[TBL] [Abstract][Full Text] [Related]
20. SIMPROT: using an empirically determined indel distribution in simulations of protein evolution.
Pang A; Smith AD; Nuin PA; Tillier ER
BMC Bioinformatics; 2005 Sep; 6():236. PubMed ID: 16188037
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]