These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

123 related articles for article (PubMed ID: 15540237)

  • 1. Template-based recognition of protein fold within the midnight and twilight zones of protein sequence similarity.
    Pirun M; Babnigg G; Stevens FJ
    J Mol Recognit; 2005; 18(3):203-12. PubMed ID: 15540237
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function.
    Mirny LA; Shakhnovich EI
    J Mol Biol; 1999 Aug; 291(1):177-96. PubMed ID: 10438614
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation.
    Russell RB; Saqi MA; Sayle RA; Bates PA; Sternberg MJ
    J Mol Biol; 1997 Jun; 269(3):423-39. PubMed ID: 9199410
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis.
    Skowronek KJ; Kosinski J; Bujnicki JM
    Proteins; 2006 Jun; 63(4):1059-68. PubMed ID: 16498623
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C; Pollastri G
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.
    Saini HK; Fischer D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W499-502. PubMed ID: 17537819
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Revealing the set of mutually correlated positions for the protein families of immunoglobulin fold.
    Galitsky B
    In Silico Biol; 2003; 3(3):241-64. PubMed ID: 12954088
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Homology versus analogy: possible evolutionary relationship of immunoglobulins, cupredoxins, and Cu,Zn-superoxide dismutase.
    Stevens FJ
    J Mol Recognit; 2008; 21(1):20-9. PubMed ID: 18080994
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein homology detection and fold inference through multiple alignment entropy profiles.
    Sánchez-Flores A; Pérez-Rueda E; Segovia L
    Proteins; 2008 Jan; 70(1):248-56. PubMed ID: 17671981
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparative analysis of structural properties of the C-type-lectin-like domain (CTLD).
    Zelensky AN; Gready JE
    Proteins; 2003 Aug; 52(3):466-77. PubMed ID: 12866057
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.
    Shamim MT; Anwaruddin M; Nagarajaram HA
    Bioinformatics; 2007 Dec; 23(24):3320-7. PubMed ID: 17989092
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K; Kurgan L
    Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structural classification of thioredoxin-like fold proteins.
    Qi Y; Grishin NV
    Proteins; 2005 Feb; 58(2):376-88. PubMed ID: 15558583
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Automated discovery of structural signatures of protein fold and function.
    Turcotte M; Muggleton SH; Sternberg MJ
    J Mol Biol; 2001 Feb; 306(3):591-605. PubMed ID: 11178916
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein structural similarity search by Ramachandran codes.
    Lo WC; Huang PJ; Chang CH; Lyu PC
    BMC Bioinformatics; 2007 Aug; 8():307. PubMed ID: 17716377
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application.
    Stevens FJ; Kuemmel C; Babnigg G; Collart FR
    J Mol Recognit; 2005; 18(2):150-7. PubMed ID: 15593246
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
    Bennett-Lovsey RM; Herbert AD; Sternberg MJ; Kelley LA
    Proteins; 2008 Feb; 70(3):611-25. PubMed ID: 17876813
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structural classification of small, disulfide-rich protein domains.
    Cheek S; Krishna SS; Grishin NV
    J Mol Biol; 2006 May; 359(1):215-37. PubMed ID: 16618491
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
    Stevens FJ
    J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.