536 related articles for article (PubMed ID: 15562516)
1. Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways.
Rekha N; Machado SM; Narayanan C; Krupa A; Srinivasan N
Proteins; 2005 Feb; 58(2):339-53. PubMed ID: 15562516
[TBL] [Abstract][Full Text] [Related]
2. Evolution of function in protein superfamilies, from a structural perspective.
Todd AE; Orengo CA; Thornton JM
J Mol Biol; 2001 Apr; 307(4):1113-43. PubMed ID: 11286560
[TBL] [Abstract][Full Text] [Related]
3. Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.
Anantharaman V; Koonin EV; Aravind L
J Mol Biol; 2001 Apr; 307(5):1271-92. PubMed ID: 11292341
[TBL] [Abstract][Full Text] [Related]
4. Statistical analysis and prediction of protein-protein interfaces.
Bordner AJ; Abagyan R
Proteins; 2005 Aug; 60(3):353-66. PubMed ID: 15906321
[TBL] [Abstract][Full Text] [Related]
5. Evolutionary and structural feedback on selection of sequences for comparative analysis of proteins.
Mihalek I; Res I; Lichtarge O
Proteins; 2006 Apr; 63(1):87-99. PubMed ID: 16397893
[TBL] [Abstract][Full Text] [Related]
6. SUPFAM: a database of sequence superfamilies of protein domains.
Pandit SB; Bhadra R; Gowri VS; Balaji S; Anand B; Srinivasan N
BMC Bioinformatics; 2004 Mar; 5():28. PubMed ID: 15113407
[TBL] [Abstract][Full Text] [Related]
7. Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.
Wrabl JO; Grishin NV
J Mol Biol; 2001 Nov; 314(3):365-74. PubMed ID: 11846551
[TBL] [Abstract][Full Text] [Related]
8. Protein domain architectures.
Mulder NJ
Methods Mol Biol; 2010; 609():83-95. PubMed ID: 20221914
[TBL] [Abstract][Full Text] [Related]
9. The geometry of domain combination in proteins.
Bashton M; Chothia C
J Mol Biol; 2002 Jan; 315(4):927-39. PubMed ID: 11812158
[TBL] [Abstract][Full Text] [Related]
10. Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis.
Fernández D; Vendrell J; Avilés FX; Fernández-Recio J
Proteins; 2007 Jul; 68(1):131-44. PubMed ID: 17407161
[TBL] [Abstract][Full Text] [Related]
11. Variation in structural location and amino acid conservation of functional sites in protein domain families.
Pils B; Copley RR; Schultz J
BMC Bioinformatics; 2005 Aug; 6():210. PubMed ID: 16122386
[TBL] [Abstract][Full Text] [Related]
12. Protein-peptide interactions adopt the same structural motifs as monomeric protein folds.
Vanhee P; Stricher F; Baeten L; Verschueren E; Lenaerts T; Serrano L; Rousseau F; Schymkowitz J
Structure; 2009 Aug; 17(8):1128-36. PubMed ID: 19679090
[TBL] [Abstract][Full Text] [Related]
13. The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies.
Anantharaman V; Aravind L
Proteins; 2004 Sep; 56(4):795-807. PubMed ID: 15281131
[TBL] [Abstract][Full Text] [Related]
14. The emergence of catalytic and structural diversity within the beta-clip fold.
Iyer LM; Aravind L
Proteins; 2004 Jun; 55(4):977-91. PubMed ID: 15146494
[TBL] [Abstract][Full Text] [Related]
15. The origins of modern proteomes.
Kurland CG; Canbäck B; Berg OG
Biochimie; 2007 Dec; 89(12):1454-63. PubMed ID: 17949885
[TBL] [Abstract][Full Text] [Related]
16. SCOWLP classification: structural comparison and analysis of protein binding regions.
Teyra J; Paszkowski-Rogacz M; Anders G; Pisabarro MT
BMC Bioinformatics; 2008 Jan; 9():9. PubMed ID: 18182098
[TBL] [Abstract][Full Text] [Related]
17. PIBASE: a comprehensive database of structurally defined protein interfaces.
Davis FP; Sali A
Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096
[TBL] [Abstract][Full Text] [Related]
18. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
Tångrot JE; Kågström B; Sauer UH
Proteins; 2009 Aug; 76(2):343-52. PubMed ID: 19173309
[TBL] [Abstract][Full Text] [Related]
19. The many faces of protein-protein interactions: A compendium of interface geometry.
Kim WK; Henschel A; Winter C; Schroeder M
PLoS Comput Biol; 2006 Sep; 2(9):e124. PubMed ID: 17009862
[TBL] [Abstract][Full Text] [Related]
20. The many faces of the helix-turn-helix domain: transcription regulation and beyond.
Aravind L; Anantharaman V; Balaji S; Babu MM; Iyer LM
FEMS Microbiol Rev; 2005 Apr; 29(2):231-62. PubMed ID: 15808743
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
