These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
210 related articles for article (PubMed ID: 15562988)
1. Molecular modelling prediction of ligand binding site flexibility. Yang AY; Källblad P; Mancera RL J Comput Aided Mol Des; 2004 Apr; 18(4):235-50. PubMed ID: 15562988 [TBL] [Abstract][Full Text] [Related]
2. Flexible ligand docking using conformational ensembles. Lorber DM; Shoichet BK Protein Sci; 1998 Apr; 7(4):938-50. PubMed ID: 9568900 [TBL] [Abstract][Full Text] [Related]
3. FlexE: efficient molecular docking considering protein structure variations. Claussen H; Buning C; Rarey M; Lengauer T J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774 [TBL] [Abstract][Full Text] [Related]
4. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function. Taylor RD; Jewsbury PJ; Essex JW J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007 [TBL] [Abstract][Full Text] [Related]
5. Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble. Sung E; Kim S; Shin W BMC Bioinformatics; 2010 May; 11():256. PubMed ID: 20478076 [TBL] [Abstract][Full Text] [Related]
6. Testing a flexible-receptor docking algorithm in a model binding site. Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985 [TBL] [Abstract][Full Text] [Related]
7. Protein flexibility in ligand docking and virtual screening to protein kinases. Cavasotto CN; Abagyan RA J Mol Biol; 2004 Mar; 337(1):209-25. PubMed ID: 15001363 [TBL] [Abstract][Full Text] [Related]
8. Ligand docking to proteins with discrete side-chain flexibility. Leach AR J Mol Biol; 1994 Jan; 235(1):345-56. PubMed ID: 8289255 [TBL] [Abstract][Full Text] [Related]
12. Using robotics to fold proteins and dock ligands. Brutlag D; Apaydin S; Guestrin C; Hsu D; Varma C; Singh A; Latombe JC Bioinformatics; 2002; 18 Suppl 2():S74. PubMed ID: 12385986 [TBL] [Abstract][Full Text] [Related]
13. Docking and scoring with alternative side-chain conformations. Hartmann C; Antes I; Lengauer T Proteins; 2009 Feb; 74(3):712-26. PubMed ID: 18704939 [TBL] [Abstract][Full Text] [Related]
14. Structure-Based Analysis of Cryptic-Site Opening. Sun Z; Wakefield AE; Kolossvary I; Beglov D; Vajda S Structure; 2020 Feb; 28(2):223-235.e2. PubMed ID: 31810712 [TBL] [Abstract][Full Text] [Related]
15. Flexible ligand docking to multiple receptor conformations: a practical alternative. Totrov M; Abagyan R Curr Opin Struct Biol; 2008 Apr; 18(2):178-84. PubMed ID: 18302984 [TBL] [Abstract][Full Text] [Related]
16. Development and validation of a genetic algorithm for flexible docking. Jones G; Willett P; Glen RC; Leach AR; Taylor R J Mol Biol; 1997 Apr; 267(3):727-48. PubMed ID: 9126849 [TBL] [Abstract][Full Text] [Related]
17. HierVLS hierarchical docking protocol for virtual ligand screening of large-molecule databases. Floriano WB; Vaidehi N; Zamanakos G; Goddard WA J Med Chem; 2004 Jan; 47(1):56-71. PubMed ID: 14695820 [TBL] [Abstract][Full Text] [Related]
18. Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces. Bohnuud T; Kozakov D; Vajda S PLoS Comput Biol; 2014 Oct; 10(10):e1003872. PubMed ID: 25275445 [TBL] [Abstract][Full Text] [Related]
19. Dead-end elimination with perturbations (DEEPer): a provable protein design algorithm with continuous sidechain and backbone flexibility. Hallen MA; Keedy DA; Donald BR Proteins; 2013 Jan; 81(1):18-39. PubMed ID: 22821798 [TBL] [Abstract][Full Text] [Related]
20. Are induced fit protein conformational changes caused by ligand-binding predictable? A molecular dynamics investigation. Gao C; Desaphy J; Vieth M J Comput Chem; 2017 Jun; 38(15):1229-1237. PubMed ID: 28419481 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]