BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

274 related articles for article (PubMed ID: 15574820)

  • 1. Reconstructing large regions of an ancestral mammalian genome in silico.
    Blanchette M; Green ED; Miller W; Haussler D
    Genome Res; 2004 Dec; 14(12):2412-23. PubMed ID: 15574820
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-wide nucleotide-level mammalian ancestor reconstruction.
    Paten B; Herrero J; Fitzgerald S; Beal K; Flicek P; Holmes I; Birney E
    Genome Res; 2008 Nov; 18(11):1829-43. PubMed ID: 18849525
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Greedy selection of species for ancestral state reconstruction on phylogenies: elimination is better than insertion.
    Li G; Ma J; Zhang L
    PLoS One; 2010 Feb; 5(2):e8985. PubMed ID: 20140213
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exact and heuristic algorithms for the Indel Maximum Likelihood Problem.
    Diallo AB; Makarenkov V; Blanchette M
    J Comput Biol; 2007 May; 14(4):446-61. PubMed ID: 17572023
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Reconstruction and evolutionary history of eutherian chromosomes.
    Kim J; Farré M; Auvil L; Capitanu B; Larkin DM; Ma J; Lewin HA
    Proc Natl Acad Sci U S A; 2017 Jul; 114(27):E5379-E5388. PubMed ID: 28630326
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconstructing contiguous regions of an ancestral genome.
    Ma J; Zhang L; Suh BB; Raney BJ; Burhans RC; Kent WJ; Blanchette M; Haussler D; Miller W
    Genome Res; 2006 Dec; 16(12):1557-65. PubMed ID: 16983148
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational reconstruction of ancestral DNA sequences.
    Blanchette M; Diallo AB; Green ED; Miller W; Haussler D
    Methods Mol Biol; 2008; 422():171-84. PubMed ID: 18629667
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Distribution and intensity of constraint in mammalian genomic sequence.
    Cooper GM; Stone EA; Asimenos G; ; Green ED; Batzoglou S; Sidow A
    Genome Res; 2005 Jul; 15(7):901-13. PubMed ID: 15965027
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using genomic data to unravel the root of the placental mammal phylogeny.
    Murphy WJ; Pringle TH; Crider TA; Springer MS; Miller W
    Genome Res; 2007 Apr; 17(4):413-21. PubMed ID: 17322288
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evolutionary Analysis of Placental Orthologues Reveals Two Ancient DNA Virus Integrations.
    Nino Barreat JG; Katzourakis A
    J Virol; 2022 Nov; 96(22):e0093322. PubMed ID: 36300941
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Early history of mammals is elucidated with the ENCODE multiple species sequencing data.
    Nikolaev S; Montoya-Burgos JI; Margulies EH; ; Rougemont J; Nyffeler B; Antonarakis SE
    PLoS Genet; 2007 Jan; 3(1):e2. PubMed ID: 17206863
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DUPCAR: reconstructing contiguous ancestral regions with duplications.
    Ma J; Ratan A; Raney BJ; Suh BB; Zhang L; Miller W; Haussler D
    J Comput Biol; 2008 Oct; 15(8):1007-27. PubMed ID: 18774902
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Investigation of the origin and spread of a Mammalian transposable element based on current sequence diversity.
    Hellen EH; Brookfield JF
    J Mol Evol; 2011 Dec; 73(5-6):287-96. PubMed ID: 22222953
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular evolution of amelogenin in mammals.
    Delgado S; Girondot M; Sire JY
    J Mol Evol; 2005 Jan; 60(1):12-30. PubMed ID: 15696365
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evolution of the ancestral mammalian karyotype and syntenic regions.
    Damas J; Corbo M; Kim J; Turner-Maier J; Farré M; Larkin DM; Ryder OA; Steiner C; Houck ML; Hall S; Shiue L; Thomas S; Swale T; Daly M; Korlach J; Uliano-Silva M; Mazzoni CJ; Birren BW; Genereux DP; Johnson J; Lindblad-Toh K; Karlsson EK; Nweeia MT; Johnson RN; ; Lewin HA
    Proc Natl Acad Sci U S A; 2022 Oct; 119(40):e2209139119. PubMed ID: 36161960
    [TBL] [Abstract][Full Text] [Related]  

  • 16. On the inference of parsimonious indel evolutionary scenarios.
    Chindelevitch L; Li Z; Blais E; Blanchette M
    J Bioinform Comput Biol; 2006 Jun; 4(3):721-44. PubMed ID: 16960972
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny.
    Belle EM; Duret L; Galtier N; Eyre-Walker A
    J Mol Evol; 2004 Jun; 58(6):653-60. PubMed ID: 15461422
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Weak preservation of local neutral substitution rates across mammalian genomes.
    Imamura H; Karro JE; Chuang JH
    BMC Evol Biol; 2009 May; 9():89. PubMed ID: 19416516
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus.
    Horvath JE; Sheedy CB; Merrett SL; Diallo AB; Swofford DL; NISC Comparative Sequencing Program ; Green ED; Willard HF
    Genome Res; 2011 Jun; 21(6):850-62. PubMed ID: 21518738
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes.
    Bourque G; Pevzner PA; Tesler G
    Genome Res; 2004 Apr; 14(4):507-16. PubMed ID: 15059991
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.