183 related articles for article (PubMed ID: 15598351)
1. 4SCOPmap: automated assignment of protein structures to evolutionary superfamilies.
Cheek S; Qi Y; Krishna SS; Kinch LN; Grishin NV
BMC Bioinformatics; 2004 Dec; 5():197. PubMed ID: 15598351
[TBL] [Abstract][Full Text] [Related]
2. AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
Gewehr JE; Hintermair V; Zimmer R
Bioinformatics; 2007 May; 23(10):1203-10. PubMed ID: 17379694
[TBL] [Abstract][Full Text] [Related]
3. fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.
Tung CH; Yang JM
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W438-43. PubMed ID: 17485476
[TBL] [Abstract][Full Text] [Related]
4. SUPFAM: a database of sequence superfamilies of protein domains.
Pandit SB; Bhadra R; Gowri VS; Balaji S; Anand B; Srinivasan N
BMC Bioinformatics; 2004 Mar; 5():28. PubMed ID: 15113407
[TBL] [Abstract][Full Text] [Related]
5. Automatic classification of protein structures using low-dimensional structure space mappings.
Asarnow D; Singh R
BMC Bioinformatics; 2014; 15 Suppl 2(Suppl 2):S1. PubMed ID: 24564500
[TBL] [Abstract][Full Text] [Related]
6. SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins - extended Database.
Chandonia JM; Fox NK; Brenner SE
J Mol Biol; 2017 Feb; 429(3):348-355. PubMed ID: 27914894
[TBL] [Abstract][Full Text] [Related]
7. Structural SCOP superfamily level classification using unsupervised machine learning.
Angadi UB; Venkatesulu M
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):601-8. PubMed ID: 21844638
[TBL] [Abstract][Full Text] [Related]
8. PASS2: an automated database of protein alignments organised as structural superfamilies.
Bhaduri A; Pugalenthi G; Sowdhamini R
BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
[TBL] [Abstract][Full Text] [Related]
9. Genomic scale sub-family assignment of protein domains.
Gough J
Nucleic Acids Res; 2006; 34(13):3625-33. PubMed ID: 16877569
[TBL] [Abstract][Full Text] [Related]
10. Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds.
Sadreyev RI; Grishin NV
BMC Struct Biol; 2006 Mar; 6():6. PubMed ID: 16549009
[TBL] [Abstract][Full Text] [Related]
11. Identification of similar regions of protein structures using integrated sequence and structure analysis tools.
Peters B; Moad C; Youn E; Buffington K; Heiland R; Mooney S
BMC Struct Biol; 2006 Mar; 6():4. PubMed ID: 16526955
[TBL] [Abstract][Full Text] [Related]
12. Secondary structure assignment that accurately reflects physical and evolutionary characteristics.
Cubellis MV; Cailliez F; Lovell SC
BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S8. PubMed ID: 16351757
[TBL] [Abstract][Full Text] [Related]
13. FuzzyART neural network for protein classification.
Angadi UB; Venkatesulu M
J Bioinform Comput Biol; 2010 Oct; 8(5):825-41. PubMed ID: 20981890
[TBL] [Abstract][Full Text] [Related]
14. Comparative mapping of sequence-based and structure-based protein domains.
Zhang Y; Chandonia JM; Ding C; Holbrook SR
BMC Bioinformatics; 2005 Mar; 6():77. PubMed ID: 15790427
[TBL] [Abstract][Full Text] [Related]
15. SCOP database in 2002: refinements accommodate structural genomics.
Lo Conte L; Brenner SE; Hubbard TJ; Chothia C; Murzin AG
Nucleic Acids Res; 2002 Jan; 30(1):264-7. PubMed ID: 11752311
[TBL] [Abstract][Full Text] [Related]
16. Identification of homology in protein structure classification.
Dietmann S; Holm L
Nat Struct Biol; 2001 Nov; 8(11):953-7. PubMed ID: 11685241
[TBL] [Abstract][Full Text] [Related]
17. Manual classification strategies in the ECOD database.
Cheng H; Liao Y; Schaeffer RD; Grishin NV
Proteins; 2015 Jul; 83(7):1238-51. PubMed ID: 25917548
[TBL] [Abstract][Full Text] [Related]
18. Analysis of superfamily specific profile-profile recognition accuracy.
Casbon JA; Saqi MA
BMC Bioinformatics; 2004 Dec; 5():200. PubMed ID: 15603591
[TBL] [Abstract][Full Text] [Related]
19. A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary.
Day R; Beck DA; Armen RS; Daggett V
Protein Sci; 2003 Oct; 12(10):2150-60. PubMed ID: 14500873
[TBL] [Abstract][Full Text] [Related]
20. An insight into domain combinations.
Apic G; Gough J; Teichmann SA
Bioinformatics; 2001; 17 Suppl 1():S83-9. PubMed ID: 11472996
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]