137 related articles for article (PubMed ID: 15608174)
1. ADDA: a domain database with global coverage of the protein universe.
Heger A; Wilton CA; Sivakumar A; Holm L
Nucleic Acids Res; 2005 Jan; 33(Database issue):D188-91. PubMed ID: 15608174
[TBL] [Abstract][Full Text] [Related]
2. The ProDom database of protein domain families: more emphasis on 3D.
Bru C; Courcelle E; Carrère S; Beausse Y; Dalmar S; Kahn D
Nucleic Acids Res; 2005 Jan; 33(Database issue):D212-5. PubMed ID: 15608179
[TBL] [Abstract][Full Text] [Related]
3. EVEREST: a collection of evolutionary conserved protein domains.
Portugaly E; Linial N; Linial M
Nucleic Acids Res; 2007 Jan; 35(Database issue):D241-6. PubMed ID: 17099230
[TBL] [Abstract][Full Text] [Related]
4. SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.
Han A; Kang HJ; Cho Y; Lee S; Kim YJ; Gong S
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W642-4. PubMed ID: 16845090
[TBL] [Abstract][Full Text] [Related]
5. SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions.
Jefferson ER; Walsh TP; Roberts TJ; Barton GJ
Nucleic Acids Res; 2007 Jan; 35(Database issue):D580-9. PubMed ID: 17202171
[TBL] [Abstract][Full Text] [Related]
6. Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
Beaussart F; Weiner J; Bornberg-Bauer E
Bioinformatics; 2007 Jul; 23(14):1834-6. PubMed ID: 17483506
[TBL] [Abstract][Full Text] [Related]
7. Protein domain architectures.
Mulder NJ
Methods Mol Biol; 2010; 609():83-95. PubMed ID: 20221914
[TBL] [Abstract][Full Text] [Related]
8. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Pearl F; Todd A; Sillitoe I; Dibley M; Redfern O; Lewis T; Bennett C; Marsden R; Grant A; Lee D; Akpor A; Maibaum M; Harrison A; Dallman T; Reeves G; Diboun I; Addou S; Lise S; Johnston C; Sillero A; Thornton J; Orengo C
Nucleic Acids Res; 2005 Jan; 33(Database issue):D247-51. PubMed ID: 15608188
[TBL] [Abstract][Full Text] [Related]
9. A comprehensive and non-redundant database of protein domain movements.
Qi G; Lee R; Hayward S
Bioinformatics; 2005 Jun; 21(12):2832-8. PubMed ID: 15802286
[TBL] [Abstract][Full Text] [Related]
10. MyHits: a new interactive resource for protein annotation and domain identification.
Pagni M; Ioannidis V; Cerutti L; Zahn-Zabal M; Jongeneel CV; Falquet L
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W332-5. PubMed ID: 15215405
[TBL] [Abstract][Full Text] [Related]
11. SCOPPI: a structural classification of protein-protein interfaces.
Winter C; Henschel A; Kim WK; Schroeder M
Nucleic Acids Res; 2006 Jan; 34(Database issue):D310-4. PubMed ID: 16381874
[TBL] [Abstract][Full Text] [Related]
12. Exhaustive enumeration of protein domain families.
Heger A; Holm L
J Mol Biol; 2003 May; 328(3):749-67. PubMed ID: 12706730
[TBL] [Abstract][Full Text] [Related]
13. PIBASE: a comprehensive database of structurally defined protein interfaces.
Davis FP; Sali A
Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096
[TBL] [Abstract][Full Text] [Related]
14. SMART 6: recent updates and new developments.
Letunic I; Doerks T; Bork P
Nucleic Acids Res; 2009 Jan; 37(Database issue):D229-32. PubMed ID: 18978020
[TBL] [Abstract][Full Text] [Related]
15. PROTCOM: searchable database of protein complexes enhanced with domain-domain structures.
Kundrotas PJ; Alexov E
Nucleic Acids Res; 2007 Jan; 35(Database issue):D575-9. PubMed ID: 17071962
[TBL] [Abstract][Full Text] [Related]
16. SledgeHMMER: a web server for batch searching the Pfam database.
Chukkapalli G; Guda C; Subramaniam S
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W542-4. PubMed ID: 15215445
[TBL] [Abstract][Full Text] [Related]
17. Searching protein structure databases with DaliLite v.3.
Holm L; Kääriäinen S; Rosenström P; Schenkel A
Bioinformatics; 2008 Dec; 24(23):2780-1. PubMed ID: 18818215
[TBL] [Abstract][Full Text] [Related]
18. PCAS--a precomputed proteome annotation database resource.
Zhang Y; Yin Y; Chen Y; Gao G; Yu P; Luo J; Jiang Y
BMC Genomics; 2003 Nov; 4(1):42. PubMed ID: 14594458
[TBL] [Abstract][Full Text] [Related]
19. PROCOGNATE: a cognate ligand domain mapping for enzymes.
Bashton M; Nobeli I; Thornton JM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D618-22. PubMed ID: 17720712
[TBL] [Abstract][Full Text] [Related]
20. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
Tångrot JE; Kågström B; Sauer UH
Proteins; 2009 Aug; 76(2):343-52. PubMed ID: 19173309
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
