210 related articles for article (PubMed ID: 15608652)
1. A closed conformation for the Pol lambda catalytic cycle.
Garcia-Diaz M; Bebenek K; Krahn JM; Kunkel TA; Pedersen LC
Nat Struct Mol Biol; 2005 Jan; 12(1):97-8. PubMed ID: 15608652
[TBL] [Abstract][Full Text] [Related]
2. Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism.
Sawaya MR; Prasad R; Wilson SH; Kraut J; Pelletier H
Biochemistry; 1997 Sep; 36(37):11205-15. PubMed ID: 9287163
[TBL] [Abstract][Full Text] [Related]
3. A quantum mechanical investigation of possible mechanisms for the nucleotidyl transfer reaction catalyzed by DNA polymerase beta.
Bojin MD; Schlick T
J Phys Chem B; 2007 Sep; 111(38):11244-52. PubMed ID: 17764165
[TBL] [Abstract][Full Text] [Related]
4. Simulations of DNA pol lambda R517 mutants indicate 517's crucial role in ternary complex stability and suggest DNA slippage origin.
Foley MC; Schlick T
J Am Chem Soc; 2008 Mar; 130(12):3967-77. PubMed ID: 18307346
[TBL] [Abstract][Full Text] [Related]
5. Structural insight into the DNA polymerase beta deoxyribose phosphate lyase mechanism.
Prasad R; Batra VK; Yang XP; Krahn JM; Pedersen LC; Beard WA; Wilson SH
DNA Repair (Amst); 2005 Dec; 4(12):1347-57. PubMed ID: 16172026
[TBL] [Abstract][Full Text] [Related]
6. Characterization of the active site of DNA polymerase beta by molecular dynamics and quantum chemical calculation.
Rittenhouse RC; Apostoluk WK; Miller JH; Straatsma TP
Proteins; 2003 Nov; 53(3):667-82. PubMed ID: 14579358
[TBL] [Abstract][Full Text] [Related]
7. Human DNA polymerase lambda diverged in evolution from DNA polymerase beta toward specific Mn(++) dependence: a kinetic and thermodynamic study.
Blanca G; Shevelev I; Ramadan K; Villani G; Spadari S; Hübscher U; Maga G
Biochemistry; 2003 Jun; 42(24):7467-76. PubMed ID: 12809503
[TBL] [Abstract][Full Text] [Related]
8. Polymerase beta simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se.
Yang L; Beard WA; Wilson SH; Broyde S; Schlick T
J Mol Biol; 2002 Apr; 317(5):651-71. PubMed ID: 11955015
[TBL] [Abstract][Full Text] [Related]
9. Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4.
Wong JH; Fiala KA; Suo Z; Ling H
J Mol Biol; 2008 May; 379(2):317-30. PubMed ID: 18448122
[TBL] [Abstract][Full Text] [Related]
10. Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III.
Lamers MH; Georgescu RE; Lee SG; O'Donnell M; Kuriyan J
Cell; 2006 Sep; 126(5):881-92. PubMed ID: 16959568
[TBL] [Abstract][Full Text] [Related]
11. A structural solution for the DNA polymerase lambda-dependent repair of DNA gaps with minimal homology.
Garcia-Diaz M; Bebenek K; Krahn JM; Blanco L; Kunkel TA; Pedersen LC
Mol Cell; 2004 Feb; 13(4):561-72. PubMed ID: 14992725
[TBL] [Abstract][Full Text] [Related]
12. DNA polymerase beta catalysis: are different mechanisms possible?
Alberts IL; Wang Y; Schlick T
J Am Chem Soc; 2007 Sep; 129(36):11100-10. PubMed ID: 17696533
[TBL] [Abstract][Full Text] [Related]
13. Role of the catalytic metal during polymerization by DNA polymerase lambda.
Garcia-Diaz M; Bebenek K; Krahn JM; Pedersen LC; Kunkel TA
DNA Repair (Amst); 2007 Sep; 6(9):1333-40. PubMed ID: 17475573
[TBL] [Abstract][Full Text] [Related]
14. De novo DNA synthesis by human DNA polymerase lambda, DNA polymerase mu and terminal deoxyribonucleotidyl transferase.
Ramadan K; Shevelev IV; Maga G; Hübscher U
J Mol Biol; 2004 May; 339(2):395-404. PubMed ID: 15136041
[TBL] [Abstract][Full Text] [Related]
15. A mechanism for all polymerases.
Steitz TA
Nature; 1998 Jan; 391(6664):231-2. PubMed ID: 9440683
[No Abstract] [Full Text] [Related]
16. Error-free bypass of 2-hydroxyadenine by human DNA polymerase lambda with Proliferating Cell Nuclear Antigen and Replication Protein A in different sequence contexts.
Crespan E; Hübscher U; Maga G
Nucleic Acids Res; 2007; 35(15):5173-81. PubMed ID: 17666409
[TBL] [Abstract][Full Text] [Related]
17. Creative template-dependent synthesis by human polymerase mu.
Moon AF; Gosavi RA; Kunkel TA; Pedersen LC; Bebenek K
Proc Natl Acad Sci U S A; 2015 Aug; 112(33):E4530-6. PubMed ID: 26240373
[TBL] [Abstract][Full Text] [Related]
18. Critical role of magnesium ions in DNA polymerase beta's closing and active site assembly.
Yang L; Arora K; Beard WA; Wilson SH; Schlick T
J Am Chem Soc; 2004 Jul; 126(27):8441-53. PubMed ID: 15238001
[TBL] [Abstract][Full Text] [Related]
19. Mechanism of nucleotide incorporation in DNA polymerase beta.
Radhakrishnan R
Biochem Biophys Res Commun; 2006 Sep; 347(3):626-33. PubMed ID: 16842743
[TBL] [Abstract][Full Text] [Related]
20. Homology modeling of four Y-family, lesion-bypass DNA polymerases: the case that E. coli Pol IV and human Pol kappa are orthologs, and E. coli Pol V and human Pol eta are orthologs.
Lee CH; Chandani S; Loechler EL
J Mol Graph Model; 2006 Sep; 25(1):87-102. PubMed ID: 16386932
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
