These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 15612561)

  • 1. [Analysis of side group conformations in molecular mechanics. Possibility of reduction of the side group conformation library in alpha-helical proteins].
    Filatov IV; Mil'chevskiĭ IuV; Esipova NG; Tumanian VG
    Biofizika; 2004; 49(6):1144-6. PubMed ID: 15612561
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Properties of polyproline II, a secondary structure element implicated in protein-protein interactions.
    Cubellis MV; Caillez F; Blundell TL; Lovell SC
    Proteins; 2005 Mar; 58(4):880-92. PubMed ID: 15657931
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The limit of accuracy of protein modeling: influence of crystal packing on protein structure.
    Eyal E; Gerzon S; Potapov V; Edelman M; Sobolev V
    J Mol Biol; 2005 Aug; 351(2):431-42. PubMed ID: 16005885
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Side-chain chiral centers of amino acid and helical-screw handedness of its peptides.
    Tanaka M; Anan K; Demizu Y; Kurihara M; Doi M; Suemune H
    J Am Chem Soc; 2005 Aug; 127(33):11570-1. PubMed ID: 16104711
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
    Desmet J; Spriet J; Lasters I
    Proteins; 2002 Jul; 48(1):31-43. PubMed ID: 12012335
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Design of amino acid sequences to fold into C(alpha)-model proteins.
    Amatori A; Tiana G; Sutto L; Ferkinghoff-Borg J; Trovato A; Broglia RA
    J Chem Phys; 2005 Aug; 123(5):054904. PubMed ID: 16108690
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Library of local descriptors models the core of proteins accurately.
    Drabikowski M; Nowakowski S; Tiuryn J
    Proteins; 2007 Nov; 69(3):499-510. PubMed ID: 17623841
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Protein Coil Library: a structural database of nonhelix, nonstrand fragments derived from the PDB.
    Fitzkee NC; Fleming PJ; Rose GD
    Proteins; 2005 Mar; 58(4):852-4. PubMed ID: 15657933
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An energy-based conformer library for side chain optimization: improved prediction and adjustable sampling.
    Subramaniam S; Senes A
    Proteins; 2012 Aug; 80(9):2218-34. PubMed ID: 22576292
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Propensities of polar and aromatic amino acids in noncanonical interactions: nonbonded contacts analysis of protein-ligand complexes in crystal structures.
    Imai YN; Inoue Y; Yamamoto Y
    J Med Chem; 2007 Mar; 50(6):1189-96. PubMed ID: 17315854
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Short hydrogen bonds in proteins.
    Rajagopal S; Vishveshwara S
    FEBS J; 2005 Apr; 272(8):1819-32. PubMed ID: 15819878
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PSSARD: protein sequence-structure analysis relational database.
    Guruprasad K; Srikanth K; Babu AV
    Int J Biol Macromol; 2005 Sep; 36(4):259-62. PubMed ID: 16054209
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces.
    Jiang L; Kuhlman B; Kortemme T; Baker D
    Proteins; 2005 Mar; 58(4):893-904. PubMed ID: 15651050
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Peptide models XLV: conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins.
    Láng A; Csizmadia IG; Perczel A
    Proteins; 2005 Feb; 58(3):571-88. PubMed ID: 15616985
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Simple solvation potential for coarse-grained models of proteins.
    Bhattacharyay A; Trovato A; Seno F
    Proteins; 2007 May; 67(2):285-92. PubMed ID: 17286285
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Recognition of alpha-helix transmembrane domains with an amphipathy scale generated by molecular dynamics using only the primary sequence of proteins.
    Mazzé FM; Fuzo CA; Ciancaglini P; Degrève L
    Genet Mol Res; 2007 Jun; 6(2):422-33. PubMed ID: 17952866
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformational fluctuations versus constraints in amino acid side chains: the evolution of information content from free amino acids to proteins.
    Bojarski AJ; Nowak M; Testa B
    Chem Biodivers; 2006 Mar; 3(3):245-73. PubMed ID: 17193263
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Stabilization of unusual structures in peptides using alpha,beta-dehydrophenylalanine: crystal and solution structures of Boc-Pro-DeltaPhe-Val-DeltaPhe-Ala-OMe and Boc-Pro-DeltaPhe-Gly-DeltaPhe-Ala-OMe.
    Mathur P; Ramagopal UA; Ramakumar S; Jagannathan NR; Chauhan VS
    Biopolymers; 2006; 84(3):298-309. PubMed ID: 16411186
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Do rotamer libraries reproduce the side-chain conformations of peptidic ligands from the PDB?
    Pupo A; Moreno E
    J Mol Graph Model; 2009 Jan; 27(5):611-9. PubMed ID: 19028123
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.