193 related articles for article (PubMed ID: 15631638)
1. A novel method for prokaryotic promoter prediction based on DNA stability.
Kanhere A; Bansal M
BMC Bioinformatics; 2005 Jan; 6():1. PubMed ID: 15631638
[TBL] [Abstract][Full Text] [Related]
2. Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition.
Rangannan V; Bansal M
Mol Biosyst; 2009 Dec; 5(12):1758-69. PubMed ID: 19593472
[TBL] [Abstract][Full Text] [Related]
3. Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals.
Vanet A; Marsan L; Labigne A; Sagot MF
J Mol Biol; 2000 Mar; 297(2):335-53. PubMed ID: 10715205
[TBL] [Abstract][Full Text] [Related]
4. A DNA structural atlas for Escherichia coli.
Pedersen AG; Jensen LJ; Brunak S; Staerfeldt HH; Ussery DW
J Mol Biol; 2000 Jun; 299(4):907-30. PubMed ID: 10843847
[TBL] [Abstract][Full Text] [Related]
5. Features for computational operon prediction in prokaryotes.
Chuang LY; Chang HW; Tsai JH; Yang CH
Brief Funct Genomics; 2012 Jul; 11(4):291-9. PubMed ID: 22753776
[TBL] [Abstract][Full Text] [Related]
6. The in silico prediction of promoters in bacterial genomes.
Towsey M; Hogan JM; Mathews S; Timms P
Genome Inform; 2007; 19():178-89. PubMed ID: 18546515
[TBL] [Abstract][Full Text] [Related]
7. An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.
Liu B; Zhang H; Zhou C; Li G; Fennell A; Wang G; Kang Y; Liu Q; Ma Q
BMC Genomics; 2016 Aug; 17():578. PubMed ID: 27507169
[TBL] [Abstract][Full Text] [Related]
8. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
9. Computational detection of prokaryotic core promoters in genomic sequences.
Kim KB; Sim JS
J Microbiol; 2005 Oct; 43(5):411-6. PubMed ID: 16273032
[TBL] [Abstract][Full Text] [Related]
10. [Construction of Corynebacterium glutamicum/E. coli shuttle promoter-probe vector].
Li K; Zhao Z; Zhang YZ; Wang Y; Ding JY
Wei Sheng Wu Xue Bao; 2007 Apr; 47(2):191-6. PubMed ID: 17552218
[TBL] [Abstract][Full Text] [Related]
11. A pattern-based nearest neighbor search approach for promoter prediction using DNA structural profiles.
Gan Y; Guan J; Zhou S
Bioinformatics; 2009 Aug; 25(16):2006-12. PubMed ID: 19515962
[TBL] [Abstract][Full Text] [Related]
12. Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability.
Rangannan V; Bansal M
J Biosci; 2007 Aug; 32(5):851-62. PubMed ID: 17914227
[TBL] [Abstract][Full Text] [Related]
13. Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
Ohler U
Nucleic Acids Res; 2006; 34(20):5943-50. PubMed ID: 17068082
[TBL] [Abstract][Full Text] [Related]
14. GeneLook: a novel ab initio gene identification system suitable for automated annotation of prokaryotic sequences.
Nishi T; Ikemura T; Kanaya S
Gene; 2005 Feb; 346():115-25. PubMed ID: 15716020
[TBL] [Abstract][Full Text] [Related]
15. Transcriptional organization of the Clostridium acetobutylicum genome.
Paredes CJ; Rigoutsos I; Papoutsakis ET
Nucleic Acids Res; 2004; 32(6):1973-81. PubMed ID: 15060177
[TBL] [Abstract][Full Text] [Related]
16. Eukaryotic and prokaryotic promoter prediction using hybrid approach.
Lin H; Li QZ
Theory Biosci; 2011 Jun; 130(2):91-100. PubMed ID: 21046474
[TBL] [Abstract][Full Text] [Related]
17. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
Besemer J; Lomsadze A; Borodovsky M
Nucleic Acids Res; 2001 Jun; 29(12):2607-18. PubMed ID: 11410670
[TBL] [Abstract][Full Text] [Related]
18. The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes.
Pemberton IK; Muskhelishvili G; Travers AA; Buckle M
J Mol Biol; 2000 Jun; 299(4):859-64. PubMed ID: 10843842
[TBL] [Abstract][Full Text] [Related]
19. A compression-based approach for coding sequences identification. I. Application to prokaryotic genomes.
Menconi G; Marangoni R
J Comput Biol; 2006 Oct; 13(8):1477-88. PubMed ID: 17061923
[TBL] [Abstract][Full Text] [Related]
20. N4: a precise and highly sensitive promoter predictor using neural network fed by nearest neighbors.
Askary A; Masoudi-Nejad A; Sharafi R; Mizbani A; Parizi SN; Purmasjedi M
Genes Genet Syst; 2009 Dec; 84(6):425-30. PubMed ID: 20228580
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
