179 related articles for article (PubMed ID: 15640451)
21. A tool for analyzing and annotating genomic sequences.
Huang X; Adams MD; Zhou H; Kerlavage AR
Genomics; 1997 Nov; 46(1):37-45. PubMed ID: 9403056
[TBL] [Abstract][Full Text] [Related]
22. NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.
Rose D; Hertel J; Reiche K; Stadler PF; Hackermüller J
Genomics; 2008 Jul; 92(1):65-74. PubMed ID: 18511233
[TBL] [Abstract][Full Text] [Related]
23. halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.
Krasheninnikova K; Diekhans M; Armstrong J; Dievskii A; Paten B; O'Brien S
Gigascience; 2020 Jun; 9(6):. PubMed ID: 32463100
[TBL] [Abstract][Full Text] [Related]
24. SITEBLAST--rapid and sensitive local alignment of genomic sequences employing motif anchors.
Michael M; Dieterich C; Vingron M
Bioinformatics; 2005 May; 21(9):2093-4. PubMed ID: 15598827
[TBL] [Abstract][Full Text] [Related]
25. STELLAR: fast and exact local alignments.
Kehr B; Weese D; Reinert K
BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S15. PubMed ID: 22151882
[TBL] [Abstract][Full Text] [Related]
26. Manipulating multiple sequence alignments via MaM and WebMaM.
Alkan C; Tüzün E; Buard J; Lethiec F; Eichler EE; Bailey JA; Sahinalp SC
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W295-8. PubMed ID: 15980474
[TBL] [Abstract][Full Text] [Related]
27. ABC: software for interactive browsing of genomic multiple sequence alignment data.
Cooper GM; Singaravelu SA; Sidow A
BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
[TBL] [Abstract][Full Text] [Related]
28. CSA: an efficient algorithm to improve circular DNA multiple alignment.
Fernandes F; Pereira L; Freitas AT
BMC Bioinformatics; 2009 Jul; 10():230. PubMed ID: 19627599
[TBL] [Abstract][Full Text] [Related]
29. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
30. Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences.
Shih AC; Lee DT; Peng CL; Wu YW
BMC Bioinformatics; 2007 Feb; 8():63. PubMed ID: 17319966
[TBL] [Abstract][Full Text] [Related]
31. Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features.
Ray WC; Munson RS; Daniels CJ
Bioinformatics; 2001 Dec; 17(12):1105-12. PubMed ID: 11751218
[TBL] [Abstract][Full Text] [Related]
32. Ngila: global pairwise alignments with logarithmic and affine gap costs.
Cartwright RA
Bioinformatics; 2007 Jun; 23(11):1427-8. PubMed ID: 17387111
[TBL] [Abstract][Full Text] [Related]
33. The UniMarker (UM) method for synteny mapping of large genomes.
Liao BY; Chang YJ; Ho JM; Hwang MJ
Bioinformatics; 2004 Nov; 20(17):3156-65. PubMed ID: 15217808
[TBL] [Abstract][Full Text] [Related]
34. Genomic features in the breakpoint regions between syntenic blocks.
Trinh P; McLysaght A; Sankoff D
Bioinformatics; 2004 Aug; 20 Suppl 1():i318-25. PubMed ID: 15262815
[TBL] [Abstract][Full Text] [Related]
35. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
36. YASS: enhancing the sensitivity of DNA similarity search.
Noé L; Kucherov G
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
[TBL] [Abstract][Full Text] [Related]
37. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
Brudno M; Do CB; Cooper GM; Kim MF; Davydov E; ; Green ED; Sidow A; Batzoglou S
Genome Res; 2003 Apr; 13(4):721-31. PubMed ID: 12654723
[TBL] [Abstract][Full Text] [Related]
38. Screening synteny blocks in pairwise genome comparisons through integer programming.
Tang H; Lyons E; Pedersen B; Schnable JC; Paterson AH; Freeling M
BMC Bioinformatics; 2011 Apr; 12():102. PubMed ID: 21501495
[TBL] [Abstract][Full Text] [Related]
39. i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.
Simillion C; Janssens K; Sterck L; Van de Peer Y
Bioinformatics; 2008 Jan; 24(1):127-8. PubMed ID: 17947255
[TBL] [Abstract][Full Text] [Related]
40. Fast discovery and visualization of conserved regions in DNA sequences using quasi-alignment.
Nagar A; Hahsler M
BMC Bioinformatics; 2013; 14 Suppl 11(Suppl 11):S2. PubMed ID: 24564200
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
