These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

181 related articles for article (PubMed ID: 15640451)

  • 81. Using multiple alignments to improve seeded local alignment algorithms.
    Flannick J; Batzoglou S
    Nucleic Acids Res; 2005; 33(14):4563-77. PubMed ID: 16100379
    [TBL] [Abstract][Full Text] [Related]  

  • 82. chainCleaner improves genome alignment specificity and sensitivity.
    Suarez HG; Langer BE; Ladde P; Hiller M
    Bioinformatics; 2017 Jun; 33(11):1596-1603. PubMed ID: 28108446
    [TBL] [Abstract][Full Text] [Related]  

  • 83. DAGchainer: a tool for mining segmental genome duplications and synteny.
    Haas BJ; Delcher AL; Wortman JR; Salzberg SL
    Bioinformatics; 2004 Dec; 20(18):3643-6. PubMed ID: 15247098
    [TBL] [Abstract][Full Text] [Related]  

  • 84. Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
    Lunter G; Rocco A; Mimouni N; Heger A; Caldeira A; Hein J
    Genome Res; 2008 Feb; 18(2):298-309. PubMed ID: 18073381
    [TBL] [Abstract][Full Text] [Related]  

  • 85. Seq-SNPing: multiple-alignment tool for SNP discovery, SNP ID identification, and RFLP genotyping.
    Chang HW; Chuang LY; Cheng YH; Ho CH; Wen CH; Yang CH
    OMICS; 2009 Jun; 13(3):253-60. PubMed ID: 19514837
    [TBL] [Abstract][Full Text] [Related]  

  • 86. Considerations in the identification of functional RNA structural elements in genomic alignments.
    Babak T; Blencowe BJ; Hughes TR
    BMC Bioinformatics; 2007 Jan; 8():33. PubMed ID: 17263882
    [TBL] [Abstract][Full Text] [Related]  

  • 87. Assembling genomic DNA sequences with PHRAP.
    de la Bastide M; McCombie WR
    Curr Protoc Bioinformatics; 2007 Mar; Chapter 11():Unit11.4. PubMed ID: 18428783
    [TBL] [Abstract][Full Text] [Related]  

  • 88. PCMA: fast and accurate multiple sequence alignment based on profile consistency.
    Pei J; Sadreyev R; Grishin NV
    Bioinformatics; 2003 Feb; 19(3):427-8. PubMed ID: 12584134
    [TBL] [Abstract][Full Text] [Related]  

  • 89. PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences.
    Sahraeian SM; Yoon BJ
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W8-12. PubMed ID: 21515632
    [TBL] [Abstract][Full Text] [Related]  

  • 90. PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.
    Elnitski L; Riemer C; Petrykowska H; Florea L; Schwartz S; Miller W; Hardison R
    Genomics; 2002 Dec; 80(6):681-90. PubMed ID: 12504859
    [TBL] [Abstract][Full Text] [Related]  

  • 91. Identifying novel constrained elements by exploiting biased substitution patterns.
    Garber M; Guttman M; Clamp M; Zody MC; Friedman N; Xie X
    Bioinformatics; 2009 Jun; 25(12):i54-62. PubMed ID: 19478016
    [TBL] [Abstract][Full Text] [Related]  

  • 92. PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences.
    Sahraeian SM; Yoon BJ
    Nucleic Acids Res; 2010 Aug; 38(15):4917-28. PubMed ID: 20413579
    [TBL] [Abstract][Full Text] [Related]  

  • 93. A hierarchical approach to aligning collinear regions of genomes.
    Roytberg MA; Ogurtsov AY; Shabalina SA; Kondrashov AS
    Bioinformatics; 2002 Dec; 18(12):1673-80. PubMed ID: 12490453
    [TBL] [Abstract][Full Text] [Related]  

  • 94. Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.
    Lu DV; Brown RH; Arumugam M; Brent MR
    Bioinformatics; 2009 Jul; 25(13):1587-93. PubMed ID: 19414532
    [TBL] [Abstract][Full Text] [Related]  

  • 95. PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.
    Kim J; Ma J
    Nucleic Acids Res; 2011 Aug; 39(15):6359-68. PubMed ID: 21576232
    [TBL] [Abstract][Full Text] [Related]  

  • 96. MAVG: locating non-overlapping maximum average segments in a given sequence.
    Lin YL; Huang X; Jiang T; Chao KM
    Bioinformatics; 2003 Jan; 19(1):151-2. PubMed ID: 12499306
    [TBL] [Abstract][Full Text] [Related]  

  • 97. PASS: a program to align short sequences.
    Campagna D; Albiero A; Bilardi A; Caniato E; Forcato C; Manavski S; Vitulo N; Valle G
    Bioinformatics; 2009 Apr; 25(7):967-8. PubMed ID: 19218350
    [TBL] [Abstract][Full Text] [Related]  

  • 98. A new approach to sequence comparison: normalized sequence alignment.
    Arslan AN; Eğecioğlu O; Pevzner PA
    Bioinformatics; 2001 Apr; 17(4):327-37. PubMed ID: 11301301
    [TBL] [Abstract][Full Text] [Related]  

  • 99. CAP3: A DNA sequence assembly program.
    Huang X; Madan A
    Genome Res; 1999 Sep; 9(9):868-77. PubMed ID: 10508846
    [TBL] [Abstract][Full Text] [Related]  

  • 100. Exon discovery by genomic sequence alignment.
    Morgenstern B; Rinner O; Abdeddaïm S; Haase D; Mayer KF; Dress AW; Mewes HW
    Bioinformatics; 2002 Jun; 18(6):777-87. PubMed ID: 12075013
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.