298 related articles for article (PubMed ID: 15642101)
1. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F; Deutsch EW; Nesvizhskii AI; Mallick P; King NL; Eng JK; Aderem A; Boyle R; Brunner E; Donohoe S; Fausto N; Hafen E; Hood L; Katze MG; Kennedy KA; Kregenow F; Lee H; Lin B; Martin D; Ranish JA; Rawlings DJ; Samelson LE; Shiio Y; Watts JD; Wollscheid B; Wright ME; Yan W; Yang L; Yi EC; Zhang H; Aebersold R
Genome Biol; 2005; 6(1):R9. PubMed ID: 15642101
[TBL] [Abstract][Full Text] [Related]
2. The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.
Loevenich SN; Brunner E; King NL; Deutsch EW; Stein SE; ; Aebersold R; Hafen E
BMC Bioinformatics; 2009 Feb; 10():59. PubMed ID: 19210778
[TBL] [Abstract][Full Text] [Related]
3. The PeptideAtlas project.
Desiere F; Deutsch EW; King NL; Nesvizhskii AI; Mallick P; Eng J; Chen S; Eddes J; Loevenich SN; Aebersold R
Nucleic Acids Res; 2006 Jan; 34(Database issue):D655-8. PubMed ID: 16381952
[TBL] [Abstract][Full Text] [Related]
4. Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.
Dworzanski JP; Snyder AP; Chen R; Zhang H; Wishart D; Li L
Anal Chem; 2004 Apr; 76(8):2355-66. PubMed ID: 15080748
[TBL] [Abstract][Full Text] [Related]
5. Proteogenomics from a bioinformatics angle: A growing field.
Menschaert G; Fenyö D
Mass Spectrom Rev; 2017 Sep; 36(5):584-599. PubMed ID: 26670565
[TBL] [Abstract][Full Text] [Related]
6. LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia.
Fröhlich T; Arnold GJ; Fritsch R; Mayr T; Laforsch C
BMC Genomics; 2009 Apr; 10():171. PubMed ID: 19383153
[TBL] [Abstract][Full Text] [Related]
7. Modification Site Localization in Peptides.
Chalkley RJ
Adv Exp Med Biol; 2016; 919():243-247. PubMed ID: 27975222
[TBL] [Abstract][Full Text] [Related]
8. Quality control of single amino acid variations detected by tandem mass spectrometry.
Yi X; Wang B; An Z; Gong F; Li J; Fu Y
J Proteomics; 2018 Sep; 187():144-151. PubMed ID: 30012419
[TBL] [Abstract][Full Text] [Related]
9. Toward high-throughput and reliable peptide identification via MS/MS spectra.
Liu J
Methods Mol Biol; 2008; 484():333-44. PubMed ID: 18592190
[TBL] [Abstract][Full Text] [Related]
10. ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets.
Pullman BS; Wertz J; Carver J; Bandeira N
J Proteome Res; 2018 Dec; 17(12):4227-4234. PubMed ID: 30985146
[TBL] [Abstract][Full Text] [Related]
11. A high-quality catalog of the Drosophila melanogaster proteome.
Brunner E; Ahrens CH; Mohanty S; Baetschmann H; Loevenich S; Potthast F; Deutsch EW; Panse C; de Lichtenberg U; Rinner O; Lee H; Pedrioli PG; Malmstrom J; Koehler K; Schrimpf S; Krijgsveld J; Kregenow F; Heck AJ; Hafen E; Schlapbach R; Aebersold R
Nat Biotechnol; 2007 May; 25(5):576-83. PubMed ID: 17450130
[TBL] [Abstract][Full Text] [Related]
12. In silico identification of new secretory peptide genes in Drosophila melanogaster.
Liu F; Baggerman G; D'Hertog W; Verleyen P; Schoofs L; Wets G
Mol Cell Proteomics; 2006 Mar; 5(3):510-22. PubMed ID: 16291998
[TBL] [Abstract][Full Text] [Related]
13. Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome.
Qian WJ; Liu T; Monroe ME; Strittmatter EF; Jacobs JM; Kangas LJ; Petritis K; Camp DG; Smith RD
J Proteome Res; 2005; 4(1):53-62. PubMed ID: 15707357
[TBL] [Abstract][Full Text] [Related]
14. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.
Heller M; Ye M; Michel PE; Morier P; Stalder D; Jünger MA; Aebersold R; Reymond F; Rossier JS
J Proteome Res; 2005; 4(6):2273-82. PubMed ID: 16335976
[TBL] [Abstract][Full Text] [Related]
15. A proteogenomic survey of the Medicago truncatula genome.
Volkening JD; Bailey DJ; Rose CM; Grimsrud PA; Howes-Podoll M; Venkateshwaran M; Westphall MS; Ané JM; Coon JJ; Sussman MR
Mol Cell Proteomics; 2012 Oct; 11(10):933-44. PubMed ID: 22774004
[TBL] [Abstract][Full Text] [Related]
16. Andromeda: a peptide search engine integrated into the MaxQuant environment.
Cox J; Neuhauser N; Michalski A; Scheltema RA; Olsen JV; Mann M
J Proteome Res; 2011 Apr; 10(4):1794-805. PubMed ID: 21254760
[TBL] [Abstract][Full Text] [Related]
17. STEM: a software tool for large-scale proteomic data analyses.
Shinkawa T; Taoka M; Yamauchi Y; Ichimura T; Kaji H; Takahashi N; Isobe T
J Proteome Res; 2005; 4(5):1826-31. PubMed ID: 16212438
[TBL] [Abstract][Full Text] [Related]
18. Protein identification using 2D-LC-MS/MS.
Delahunty C; Yates JR
Methods; 2005 Mar; 35(3):248-55. PubMed ID: 15722221
[TBL] [Abstract][Full Text] [Related]
19. Protein identification pipeline for the homology-driven proteomics.
Junqueira M; Spirin V; Balbuena TS; Thomas H; Adzhubei I; Sunyaev S; Shevchenko A
J Proteomics; 2008 Aug; 71(3):346-56. PubMed ID: 18639657
[TBL] [Abstract][Full Text] [Related]
20. Proteomics-grade de novo sequencing approach.
Savitski MM; Nielsen ML; Kjeldsen F; Zubarev RA
J Proteome Res; 2005; 4(6):2348-54. PubMed ID: 16335984
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]