284 related articles for article (PubMed ID: 15677705)
1. A grid layout algorithm for automatic drawing of biochemical networks.
Li W; Kurata H
Bioinformatics; 2005 May; 21(9):2036-42. PubMed ID: 15677705
[TBL] [Abstract][Full Text] [Related]
2. Fast grid layout algorithm for biological networks with sweep calculation.
Kojima K; Nagasaki M; Miyano S
Bioinformatics; 2008 Jun; 24(12):1433-41. PubMed ID: 18424458
[TBL] [Abstract][Full Text] [Related]
3. An efficient grid layout algorithm for biological networks utilizing various biological attributes.
Kojima K; Nagasaki M; Jeong E; Kato M; Miyano S
BMC Bioinformatics; 2007 Mar; 8():76. PubMed ID: 17338825
[TBL] [Abstract][Full Text] [Related]
4. Supporting the SBML layout extension.
Deckard A; Bergmann FT; Sauro HM
Bioinformatics; 2006 Dec; 22(23):2966-7. PubMed ID: 17038346
[TBL] [Abstract][Full Text] [Related]
5. Automatic drawing of biological networks using cross cost and subcomponent data.
Kato M; Nagasaki M; Doi A; Miyano S
Genome Inform; 2005; 16(2):22-31. PubMed ID: 16901086
[TBL] [Abstract][Full Text] [Related]
6. Exploration of networks using overview+detail with constraint-based cooperative layout.
Dwyer T; Marriott K; Schreiber F; Stuckey P; Woodward M; Wybrow M
IEEE Trans Vis Comput Graph; 2008; 14(6):1293-300. PubMed ID: 18988976
[TBL] [Abstract][Full Text] [Related]
7. Integration of metabolic networks and gene expression in virtual reality.
Yang Y; Engin L; Wurtele ES; Cruz-Neira C; Dickerson JA
Bioinformatics; 2005 Sep; 21(18):3645-50. PubMed ID: 16020466
[TBL] [Abstract][Full Text] [Related]
8. Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.
Werhli AV; Grzegorczyk M; Husmeier D
Bioinformatics; 2006 Oct; 22(20):2523-31. PubMed ID: 16844710
[TBL] [Abstract][Full Text] [Related]
9. Grid cellware: the first grid-enabled tool for modelling and simulating cellular processes.
Dhar PK; Meng TC; Somani S; Ye L; Sakharkar K; Krishnan A; Ridwan AB; Wah SH; Chitre M; Hao Z
Bioinformatics; 2005 Apr; 21(7):1284-7. PubMed ID: 15546936
[TBL] [Abstract][Full Text] [Related]
10. High quality visualization of biochemical pathways in BioPath.
Schreiber F
In Silico Biol; 2002; 2(2):59-73. PubMed ID: 12066841
[TBL] [Abstract][Full Text] [Related]
11. Parameter estimation using Simulated Annealing for S-system models of biochemical networks.
Gonzalez OR; Küper C; Jung K; Naval PC; Mendoza E
Bioinformatics; 2007 Feb; 23(4):480-6. PubMed ID: 17038344
[TBL] [Abstract][Full Text] [Related]
12. MAVisto: a tool for the exploration of network motifs.
Schreiber F; Schwöbbermeyer H
Bioinformatics; 2005 Sep; 21(17):3572-4. PubMed ID: 16020473
[TBL] [Abstract][Full Text] [Related]
13. Fitting a geometric graph to a protein-protein interaction network.
Higham DJ; Rasajski M; Przulj N
Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248
[TBL] [Abstract][Full Text] [Related]
14. Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps.
Inoue K; Shimozono S; Yoshida H; Kurata H
PLoS One; 2012; 7(6):e37739. PubMed ID: 22679486
[TBL] [Abstract][Full Text] [Related]
15. Three-dimensional visualization of protein interaction networks.
Han K; Byun Y
Comput Biol Med; 2004 Mar; 34(2):127-39. PubMed ID: 14972632
[TBL] [Abstract][Full Text] [Related]
16. Investigating the dynamic behavior of biochemical networks using model families.
Haunschild MD; Freisleben B; Takors R; Wiechert W
Bioinformatics; 2005 Apr; 21(8):1617-25. PubMed ID: 15604106
[TBL] [Abstract][Full Text] [Related]
17. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
18. MatrixExplorer: a dual-representation system to explore social networks.
Henry N; Fekete JD
IEEE Trans Vis Comput Graph; 2006; 12(5):677-84. PubMed ID: 17080787
[TBL] [Abstract][Full Text] [Related]
19. TreePlus: interactive exploration of networks with enhanced tree layouts.
Lee B; Parr CS; Plaisant C; Bederson BB; Veksler VD; Gray WD; Kotfila C
IEEE Trans Vis Comput Graph; 2006; 12(6):1414-26. PubMed ID: 17073365
[TBL] [Abstract][Full Text] [Related]
20. GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.
Garcia O; Saveanu C; Cline M; Fromont-Racine M; Jacquier A; Schwikowski B; Aittokallio T
Bioinformatics; 2007 Feb; 23(3):394-6. PubMed ID: 17127678
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]