308 related articles for article (PubMed ID: 15701734)
1. SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments.
Das R; Laederach A; Pearlman SM; Herschlag D; Altman RB
RNA; 2005 Mar; 11(3):344-54. PubMed ID: 15701734
[TBL] [Abstract][Full Text] [Related]
2. Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.
Laederach A; Das R; Vicens Q; Pearlman SM; Brenowitz M; Herschlag D; Altman RB
Nat Protoc; 2008; 3(9):1395-401. PubMed ID: 18772866
[TBL] [Abstract][Full Text] [Related]
3. Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.
Simmons K; Martin JS; Shcherbakova I; Laederach A
Methods Enzymol; 2009; 468():47-66. PubMed ID: 20946764
[TBL] [Abstract][Full Text] [Related]
4. Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles.
Lee S; Kim H; Tian S; Lee T; Yoon S; Das R
Bioinformatics; 2015 Sep; 31(17):2808-15. PubMed ID: 25943472
[TBL] [Abstract][Full Text] [Related]
5. Differential analysis of 2D gel images.
Li F; Seillier-Moiseiwitsch F
Methods Enzymol; 2011; 487():595-609. PubMed ID: 21187240
[TBL] [Abstract][Full Text] [Related]
6. Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions.
Takamoto K; Chance MR; Brenowitz M
Nucleic Acids Res; 2004 Aug; 32(15):E119. PubMed ID: 15319447
[TBL] [Abstract][Full Text] [Related]
7. UNAFold: software for nucleic acid folding and hybridization.
Markham NR; Zuker M
Methods Mol Biol; 2008; 453():3-31. PubMed ID: 18712296
[TBL] [Abstract][Full Text] [Related]
8. Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches.
Petri V; Brenowitz M
Curr Opin Biotechnol; 1997 Feb; 8(1):36-44. PubMed ID: 9013649
[TBL] [Abstract][Full Text] [Related]
9. Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.
Sclavi B; Woodson S; Sullivan M; Chance MR; Brenowitz M
J Mol Biol; 1997 Feb; 266(1):144-59. PubMed ID: 9054977
[TBL] [Abstract][Full Text] [Related]
10. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
Mitra S; Shcherbakova IV; Altman RB; Brenowitz M; Laederach A
Nucleic Acids Res; 2008 Jun; 36(11):e63. PubMed ID: 18477638
[TBL] [Abstract][Full Text] [Related]
11. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.
Shaytan AK; Xiao H; Armeev GA; Gaykalova DA; Komarova GA; Wu C; Studitsky VM; Landsman D; Panchenko AR
Nat Protoc; 2018 Nov; 13(11):2535-2556. PubMed ID: 30341436
[TBL] [Abstract][Full Text] [Related]
12. Sfold web server for statistical folding and rational design of nucleic acids.
Ding Y; Chan CY; Lawrence CE
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W135-41. PubMed ID: 15215366
[TBL] [Abstract][Full Text] [Related]
13. Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting.
Shcherbakova I; Brenowitz M
Nat Protoc; 2008; 3(2):288-302. PubMed ID: 18274531
[TBL] [Abstract][Full Text] [Related]
14. Protein-RNA footprinting: an evolving tool.
Fourmy D; Yoshizawa S
Wiley Interdiscip Rev RNA; 2012; 3(4):557-66. PubMed ID: 22566372
[TBL] [Abstract][Full Text] [Related]
15. PepFoot: A Software Package for Semiautomated Processing of Protein Footprinting Data.
Bellamy-Carter J; Oldham NJ
J Proteome Res; 2019 Jul; 18(7):2925-2930. PubMed ID: 31132275
[TBL] [Abstract][Full Text] [Related]
16. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
17. Hydroxyl-radical footprinting to probe equilibrium changes in RNA tertiary structure.
Shcherbakova I; Mitra S
Methods Enzymol; 2009; 468():31-46. PubMed ID: 20946763
[TBL] [Abstract][Full Text] [Related]
18. Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.
Shapiro BA; Kasprzak W; Grunewald C; Aman J
J Mol Graph Model; 2006 Dec; 25(4):514-31. PubMed ID: 16725358
[TBL] [Abstract][Full Text] [Related]
19. Comparison of two automatic cell-counting solutions for fluorescent microscopic images.
Lojk J; Čibej U; Karlaš D; Šajn L; Pavlin M
J Microsc; 2015 Oct; 260(1):107-16. PubMed ID: 26098834
[TBL] [Abstract][Full Text] [Related]
20. Predicting RNA structure: advances and limitations.
Hofacker IL; Lorenz R
Methods Mol Biol; 2014; 1086():1-19. PubMed ID: 24136595
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
