1413 related articles for article (PubMed ID: 15703242)
1. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
Kosakovsky Pond SL; Frost SD
Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
[TBL] [Abstract][Full Text] [Related]
2. Evidence for positive selection on a sexual reproduction gene in the diatom genus Thalassiosira (Bacillariophyta).
Sorhannus U; Kosakovsky Pond SL
J Mol Evol; 2006 Aug; 63(2):231-9. PubMed ID: 16830090
[TBL] [Abstract][Full Text] [Related]
3. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.
Lemey P; Minin VN; Bielejec F; Kosakovsky Pond SL; Suchard MA
Bioinformatics; 2012 Dec; 28(24):3248-56. PubMed ID: 23064000
[TBL] [Abstract][Full Text] [Related]
4. Inferring natural selection operating on conservative and radical substitution at single amino acid sites.
Suzuki Y
Genes Genet Syst; 2007 Aug; 82(4):341-60. PubMed ID: 17895585
[TBL] [Abstract][Full Text] [Related]
5. A method for detecting positive selection at single amino acid sites.
Suzuki Y; Gojobori T
Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
[TBL] [Abstract][Full Text] [Related]
6. Codon-substitution models for heterogeneous selection pressure at amino acid sites.
Yang Z; Nielsen R; Goldman N; Pedersen AM
Genetics; 2000 May; 155(1):431-49. PubMed ID: 10790415
[TBL] [Abstract][Full Text] [Related]
7. Identifying sites under positive selection with uncertain parameter estimates.
Aris-Brosou S
Genome; 2006 Jul; 49(7):767-76. PubMed ID: 16936785
[TBL] [Abstract][Full Text] [Related]
8. Site-to-site variation of synonymous substitution rates.
Pond SK; Muse SV
Mol Biol Evol; 2005 Dec; 22(12):2375-85. PubMed ID: 16107593
[TBL] [Abstract][Full Text] [Related]
9. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages.
Yang Z; Nielsen R
Mol Biol Evol; 2002 Jun; 19(6):908-17. PubMed ID: 12032247
[TBL] [Abstract][Full Text] [Related]
10. The site-wise log-likelihood score is a good predictor of genes under positive selection.
Wang HC; Susko E; Roger AJ
J Mol Evol; 2013 May; 76(5):280-94. PubMed ID: 23595859
[TBL] [Abstract][Full Text] [Related]
11. New methods for detecting positive selection at single amino acid sites.
Suzuki Y
J Mol Evol; 2004 Jul; 59(1):11-9. PubMed ID: 15383903
[TBL] [Abstract][Full Text] [Related]
12. Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences.
Ngandu NK; Scheffler K; Moore P; Woodman Z; Martin D; Seoighe C
Virol J; 2008 Dec; 5():160. PubMed ID: 19105834
[TBL] [Abstract][Full Text] [Related]
13. Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.
Rodrigue N; Lartillot N
Mol Biol Evol; 2017 Jan; 34(1):204-214. PubMed ID: 27744408
[TBL] [Abstract][Full Text] [Related]
14. Detecting amino acid sites under positive selection and purifying selection.
Massingham T; Goldman N
Genetics; 2005 Mar; 169(3):1753-62. PubMed ID: 15654091
[TBL] [Abstract][Full Text] [Related]
15. A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution.
Bielawski JP; Yang Z
J Mol Evol; 2004 Jul; 59(1):121-32. PubMed ID: 15383915
[TBL] [Abstract][Full Text] [Related]
16. Bayes empirical bayes inference of amino acid sites under positive selection.
Yang Z; Wong WS; Nielsen R
Mol Biol Evol; 2005 Apr; 22(4):1107-18. PubMed ID: 15689528
[TBL] [Abstract][Full Text] [Related]
17. Extensively Parameterized Mutation-Selection Models Reliably Capture Site-Specific Selective Constraint.
Spielman SJ; Wilke CO
Mol Biol Evol; 2016 Nov; 33(11):2990-3002. PubMed ID: 27512115
[TBL] [Abstract][Full Text] [Related]
18. Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates.
Zhang Z; Yu J
Genomics Proteomics Bioinformatics; 2006 Aug; 4(3):173-81. PubMed ID: 17127215
[TBL] [Abstract][Full Text] [Related]
19. Molecular evolution of nuclear genes in Cupressacea, a group of conifer trees.
Kusumi J; Tsumura Y; Yoshimaru H; Tachida H
Mol Biol Evol; 2002 May; 19(5):736-47. PubMed ID: 11961107
[TBL] [Abstract][Full Text] [Related]
20. Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates.
Dunn KA; Kenney T; Gu H; Bielawski JP
BMC Evol Biol; 2019 Jan; 19(1):22. PubMed ID: 30642241
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
