146 related articles for article (PubMed ID: 15725735)
1. An efficient algorithm to compute the landscape of locally optimal RNA secondary structures with respect to the Nussinov-Jacobson energy model.
Clote P
J Comput Biol; 2005; 12(1):83-101. PubMed ID: 15725735
[TBL] [Abstract][Full Text] [Related]
2. Combinatorics of saturated secondary structures of RNA.
Clote P
J Comput Biol; 2006 Nov; 13(9):1640-57. PubMed ID: 17147486
[TBL] [Abstract][Full Text] [Related]
3. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
Waldispühl J; Clote P
J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015
[TBL] [Abstract][Full Text] [Related]
4. Asymptotic number of hairpins of saturated RNA secondary structures.
Clote P; Kranakis E; Krizanc D
Bull Math Biol; 2013 Dec; 75(12):2410-30. PubMed ID: 24142625
[TBL] [Abstract][Full Text] [Related]
5. Computing the partition function for kinetically trapped RNA secondary structures.
Lorenz WA; Clote P
PLoS One; 2011 Jan; 6(1):e16178. PubMed ID: 21297972
[TBL] [Abstract][Full Text] [Related]
6. RNA locally optimal secondary structures.
Saffarian A; Giraud M; de Monte A; Touzet H
J Comput Biol; 2012 Oct; 19(10):1120-33. PubMed ID: 23057822
[TBL] [Abstract][Full Text] [Related]
7. Energy landscape of k-point mutants of an RNA molecule.
Clote P; Waldispühl J; Behzadi B; Steyaert JM
Bioinformatics; 2005 Nov; 21(22):4140-7. PubMed ID: 16159920
[TBL] [Abstract][Full Text] [Related]
8. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
9. Moments of the Boltzmann distribution for RNA secondary structures.
Miklós I; Meyer IM; Nagy B
Bull Math Biol; 2005 Sep; 67(5):1031-47. PubMed ID: 15998494
[TBL] [Abstract][Full Text] [Related]
10. Parsing nucleic acid pseudoknotted secondary structure: algorithm and applications.
Rastegari B; Condon A
J Comput Biol; 2007; 14(1):16-32. PubMed ID: 17381343
[TBL] [Abstract][Full Text] [Related]
11. Rfold: an exact algorithm for computing local base pairing probabilities.
Kiryu H; Kin T; Asai K
Bioinformatics; 2008 Feb; 24(3):367-73. PubMed ID: 18056736
[TBL] [Abstract][Full Text] [Related]
12. Novel representation of RNA secondary structure used to improve prediction algorithms.
Zou Q; Lin C; Liu XY; Han YP; Li WB; Guo MZ
Genet Mol Res; 2011 Sep; 10(3):1986-98. PubMed ID: 21948761
[TBL] [Abstract][Full Text] [Related]
13. Irreducibility in RNA structures.
Jin EY; Reidys CM
Bull Math Biol; 2010 Feb; 72(2):375-99. PubMed ID: 19890676
[TBL] [Abstract][Full Text] [Related]
14. Maximum expected accuracy structural neighbors of an RNA secondary structure.
Clote P; Lou F; Lorenz WA
BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S6. PubMed ID: 22537010
[TBL] [Abstract][Full Text] [Related]
15. Boltzmann probability of RNA structural neighbors and riboswitch detection.
Freyhult E; Moulton V; Clote P
Bioinformatics; 2007 Aug; 23(16):2054-62. PubMed ID: 17573364
[TBL] [Abstract][Full Text] [Related]
16. Combinatorics of locally optimal RNA secondary structures.
Fusy E; Clote P
J Math Biol; 2014 Jan; 68(1-2):341-75. PubMed ID: 23263300
[TBL] [Abstract][Full Text] [Related]
17. Practicality and time complexity of a sparsified RNA folding algorithm.
Dimitrieva S; Bucher P
J Bioinform Comput Biol; 2012 Apr; 10(2):1241007. PubMed ID: 22809342
[TBL] [Abstract][Full Text] [Related]
18. [Formation of spatial structure of RNA molecules].
Leonova EI; Baranov MV; Galzitskaia OV
Mol Biol (Mosk); 2012; 46(1):37-51. PubMed ID: 22642100
[TBL] [Abstract][Full Text] [Related]
19. Tertiary structure prediction of RNA-RNA complexes using a secondary structure and fragment-based method.
Yamasaki S; Hirokawa T; Asai K; Fukui K
J Chem Inf Model; 2014 Feb; 54(2):672-82. PubMed ID: 24479711
[TBL] [Abstract][Full Text] [Related]
20. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]