166 related articles for article (PubMed ID: 15755451)
1. Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families.
Torrance JW; Bartlett GJ; Porter CT; Thornton JM
J Mol Biol; 2005 Apr; 347(3):565-81. PubMed ID: 15755451
[TBL] [Abstract][Full Text] [Related]
2. Evolution of function in protein superfamilies, from a structural perspective.
Todd AE; Orengo CA; Thornton JM
J Mol Biol; 2001 Apr; 307(4):1113-43. PubMed ID: 11286560
[TBL] [Abstract][Full Text] [Related]
3. Molecular and structural basis of drift in the functions of closely-related homologous enzyme domains: implications for function annotation based on homology searches and structural genomics.
Roy A; Srinivasan N; Gowri VS
In Silico Biol; 2009; 9(1-2):S41-55. PubMed ID: 19537164
[TBL] [Abstract][Full Text] [Related]
4. Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
Skolnick J; Kihara D; Zhang Y
Proteins; 2004 Aug; 56(3):502-18. PubMed ID: 15229883
[TBL] [Abstract][Full Text] [Related]
5. Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates.
Levy R; Edelman M; Sobolev V
Proteins; 2009 Aug; 76(2):365-74. PubMed ID: 19173310
[TBL] [Abstract][Full Text] [Related]
6. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
Mooney C; Pollastri G
Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
[TBL] [Abstract][Full Text] [Related]
7. Protein function prediction using local 3D templates.
Laskowski RA; Watson JD; Thornton JM
J Mol Biol; 2005 Aug; 351(3):614-26. PubMed ID: 16019027
[TBL] [Abstract][Full Text] [Related]
8. Template-based modeling and free modeling by I-TASSER in CASP7.
Zhang Y
Proteins; 2007; 69 Suppl 8():108-17. PubMed ID: 17894355
[TBL] [Abstract][Full Text] [Related]
9. Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships.
Gold ND; Jackson RM
J Mol Biol; 2006 Feb; 355(5):1112-24. PubMed ID: 16359705
[TBL] [Abstract][Full Text] [Related]
10. An improved prediction of catalytic residues in enzyme structures.
Tang YR; Sheng ZY; Chen YZ; Zhang Z
Protein Eng Des Sel; 2008 May; 21(5):295-302. PubMed ID: 18287176
[TBL] [Abstract][Full Text] [Related]
11. Protein structure prediction based on sequence similarity.
Jaroszewski L
Methods Mol Biol; 2009; 569():129-56. PubMed ID: 19623489
[TBL] [Abstract][Full Text] [Related]
12. Variation in structural location and amino acid conservation of functional sites in protein domain families.
Pils B; Copley RR; Schultz J
BMC Bioinformatics; 2005 Aug; 6():210. PubMed ID: 16122386
[TBL] [Abstract][Full Text] [Related]
13. TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites.
Wallace AC; Borkakoti N; Thornton JM
Protein Sci; 1997 Nov; 6(11):2308-23. PubMed ID: 9385633
[TBL] [Abstract][Full Text] [Related]
14. Evolution of binding sites for zinc and calcium ions playing structural roles.
Torrance JW; Macarthur MW; Thornton JM
Proteins; 2008 May; 71(2):813-30. PubMed ID: 18004751
[TBL] [Abstract][Full Text] [Related]
15. Computed protonation properties: unique capabilities for protein functional site prediction.
Murga LF; Wei Y; Ondrechen MJ
Genome Inform; 2007; 19():107-18. PubMed ID: 18546509
[TBL] [Abstract][Full Text] [Related]
16. Generation of 3D templates of active sites of proteins with rigid prosthetic groups.
Nebel JC
Bioinformatics; 2006 May; 22(10):1183-9. PubMed ID: 16473871
[TBL] [Abstract][Full Text] [Related]
17. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
Bennett-Lovsey RM; Herbert AD; Sternberg MJ; Kelley LA
Proteins; 2008 Feb; 70(3):611-25. PubMed ID: 17876813
[TBL] [Abstract][Full Text] [Related]
18. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
19. Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces.
Ben-Shimon A; Eisenstein M
J Mol Biol; 2005 Aug; 351(2):309-26. PubMed ID: 16019028
[TBL] [Abstract][Full Text] [Related]
20. Structural diversity of domain superfamilies in the CATH database.
Reeves GA; Dallman TJ; Redfern OC; Akpor A; Orengo CA
J Mol Biol; 2006 Jul; 360(3):725-41. PubMed ID: 16780872
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
