1210 related articles for article (PubMed ID: 15757521)
1. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
2. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
3. Scoredist: a simple and robust protein sequence distance estimator.
Sonnhammer EL; Hollich V
BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
[TBL] [Abstract][Full Text] [Related]
4. Vestige: maximum likelihood phylogenetic footprinting.
Wakefield MJ; Maxwell P; Huttley GA
BMC Bioinformatics; 2005 May; 6():130. PubMed ID: 15921531
[TBL] [Abstract][Full Text] [Related]
5. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
6. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
7. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
Waddell PJ; Kishino H; Ota R
Genome Inform; 2002; 13():82-92. PubMed ID: 14571377
[TBL] [Abstract][Full Text] [Related]
8. Normalized global alignment for protein sequences.
Peris G; Marzal A
J Theor Biol; 2011 Dec; 291():22-8. PubMed ID: 21945336
[TBL] [Abstract][Full Text] [Related]
9. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
10. Representation in stochastic search for phylogenetic tree reconstruction.
Weber G; Ohno-Machado L; Shieber S
J Biomed Inform; 2006 Feb; 39(1):43-50. PubMed ID: 16359929
[TBL] [Abstract][Full Text] [Related]
11. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
12. New approaches to phylogenetic tree search and their application to large numbers of protein alignments.
Whelan S
Syst Biol; 2007 Oct; 56(5):727-40. PubMed ID: 17849327
[TBL] [Abstract][Full Text] [Related]
13. pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
Minh BQ; Vinh le S; von Haeseler A; Schmidt HA
Bioinformatics; 2005 Oct; 21(19):3794-6. PubMed ID: 16046495
[TBL] [Abstract][Full Text] [Related]
14. Toward extracting all phylogenetic information from matrices of evolutionary distances.
Roch S
Science; 2010 Mar; 327(5971):1376-9. PubMed ID: 20223986
[TBL] [Abstract][Full Text] [Related]
15. Joint Bayesian estimation of alignment and phylogeny.
Redelings BD; Suchard MA
Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
[TBL] [Abstract][Full Text] [Related]
16. Phylogenetic analysis based on spectral methods.
Abeysundera M; Field C; Gu H
Mol Biol Evol; 2012 Feb; 29(2):579-97. PubMed ID: 21880577
[TBL] [Abstract][Full Text] [Related]
17. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C; Higgins DG; Heringa J
J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570
[TBL] [Abstract][Full Text] [Related]
18. Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores.
Bastien O; Maréchal E
BMC Bioinformatics; 2008 Aug; 9():332. PubMed ID: 18687111
[TBL] [Abstract][Full Text] [Related]
19. Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates.
Ninio M; Privman E; Pupko T; Friedman N
Bioinformatics; 2007 Jan; 23(2):e136-41. PubMed ID: 17237082
[TBL] [Abstract][Full Text] [Related]
20. Statistics of local multiple alignments.
Prakash A; Tompa M
Bioinformatics; 2005 Jun; 21 Suppl 1():i344-50. PubMed ID: 15961477
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
