216 related articles for article (PubMed ID: 15777696)
1. Looking at structure, stability, and evolution of proteins through the principal eigenvector of contact matrices and hydrophobicity profiles.
Bastolla U; Porto M; Roman HE; Vendruscolo M
Gene; 2005 Mar; 347(2):219-30. PubMed ID: 15777696
[TBL] [Abstract][Full Text] [Related]
2. Principal eigenvector of contact matrices and hydrophobicity profiles in proteins.
Bastolla U; Porto M; Roman HE; Vendruscolo M
Proteins; 2005 Jan; 58(1):22-30. PubMed ID: 15523667
[TBL] [Abstract][Full Text] [Related]
3. Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences.
Porto M; Roman HE; Vendruscolo M; Bastolla U
Mol Biol Evol; 2005 Mar; 22(3):630-8. PubMed ID: 15537801
[TBL] [Abstract][Full Text] [Related]
4. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
Bastolla U; Porto M; Roman HE; Vendruscolo M
BMC Evol Biol; 2006 May; 6():43. PubMed ID: 16737532
[TBL] [Abstract][Full Text] [Related]
5. Effective connectivity profile: a structural representation that evidences the relationship between protein structures and sequences.
Bastolla U; Ortíz AR; Porto M; Teichert F
Proteins; 2008 Dec; 73(4):872-88. PubMed ID: 18536008
[TBL] [Abstract][Full Text] [Related]
6. Natural selection for kinetic stability is a likely origin of correlations between mutational effects on protein energetics and frequencies of amino acid occurrences in sequence alignments.
Godoy-Ruiz R; Ariza F; Rodriguez-Larrea D; Perez-Jimenez R; Ibarra-Molero B; Sanchez-Ruiz JM
J Mol Biol; 2006 Oct; 362(5):966-78. PubMed ID: 16935299
[TBL] [Abstract][Full Text] [Related]
7. Local interactions in protein folding determined through an inverse folding model.
Bastolla U; Porto M; Ortíz AR
Proteins; 2008 Apr; 71(1):278-99. PubMed ID: 17932940
[TBL] [Abstract][Full Text] [Related]
8. Genomic determinants of protein folding thermodynamics in prokaryotic organisms.
Bastolla U; Moya A; Viguera E; van Ham RC
J Mol Biol; 2004 Nov; 343(5):1451-66. PubMed ID: 15491623
[TBL] [Abstract][Full Text] [Related]
9. Stability constraints and protein evolution: the role of chain length, composition and disulfide bonds.
Bastolla U; Demetrius L
Protein Eng Des Sel; 2005 Sep; 18(9):405-15. PubMed ID: 16085657
[TBL] [Abstract][Full Text] [Related]
10. Frustration and hydrophobicity interplay in protein folding and protein evolution.
Oliveira LC; Silva RT; Leite VB; Chahine J
J Chem Phys; 2006 Aug; 125(8):084904. PubMed ID: 16965054
[TBL] [Abstract][Full Text] [Related]
11. Role of mutational bias and natural selection on genome-wide nucleotide bias in prokaryotic organisms.
Banerjee T; Gupta SK; Ghosh TC
Biosystems; 2005 Jul; 81(1):11-8. PubMed ID: 15917123
[TBL] [Abstract][Full Text] [Related]
12. Can contact potentials reliably predict stability of proteins?
Khatun J; Khare SD; Dokholyan NV
J Mol Biol; 2004 Mar; 336(5):1223-38. PubMed ID: 15037081
[TBL] [Abstract][Full Text] [Related]
13. Understanding hierarchical protein evolution from first principles.
Dokholyan NV; Shakhnovich EI
J Mol Biol; 2001 Sep; 312(1):289-307. PubMed ID: 11545603
[TBL] [Abstract][Full Text] [Related]
14. Increased folding stability of TEM-1 beta-lactamase by in vitro selection.
Kather I; Jakob RP; Dobbek H; Schmid FX
J Mol Biol; 2008 Oct; 383(1):238-51. PubMed ID: 18706424
[TBL] [Abstract][Full Text] [Related]
15. Native protein sequences are designed to destabilize folding intermediates.
Isogai Y
Biochemistry; 2006 Feb; 45(8):2488-92. PubMed ID: 16489741
[TBL] [Abstract][Full Text] [Related]
16. Positive selection dictates the choice between kinetic and thermodynamic protein folding and stability in subtilases.
Subbian E; Yabuta Y; Shinde U
Biochemistry; 2004 Nov; 43(45):14348-60. PubMed ID: 15533039
[TBL] [Abstract][Full Text] [Related]
17. Another look at the conditions for the extraction of protein knowledge-based potentials.
Betancourt MR
Proteins; 2009 Jul; 76(1):72-85. PubMed ID: 19089977
[TBL] [Abstract][Full Text] [Related]
18. Generality of the structurally constrained protein evolution model: assessment on representatives of the four main fold classes.
Parisi G; Echave J
Gene; 2005 Jan; 345(1):45-53. PubMed ID: 15716088
[TBL] [Abstract][Full Text] [Related]
19. Untangling influences of hydrophobicity on protein sequences and structures.
Yahyanejad M; Burge CB; Kardar M
Proteins; 2006 Mar; 62(4):1101-6. PubMed ID: 16374871
[TBL] [Abstract][Full Text] [Related]
20. An empirical energy potential with a reference state for protein fold and sequence recognition.
Miyazawa S; Jernigan RL
Proteins; 1999 Aug; 36(3):357-69. PubMed ID: 10409829
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]