242 related articles for article (PubMed ID: 15779909)
21. Secondary structure inducing potential of beta-amino acids: torsion angle clustering facilitates comparison and analysis of the conformation during MD trajectories.
Guthöhrlein EW; Malesević M; Majer Z; Sewald N
Biopolymers; 2007; 88(6):829-39. PubMed ID: 17922495
[TBL] [Abstract][Full Text] [Related]
22. Interactive NMR and computer simulation studies of lanthionine-ring structures.
Palmer DE; Mierke DF; Pattaroni C; Goodman M; Wakamiya T; Fukase K; Kitazawa M; Fujita H; Shiba T
Biopolymers; 1989 Jan; 28(1):397-408. PubMed ID: 2720116
[TBL] [Abstract][Full Text] [Related]
23. Flexibility of "polyunsaturated fatty acid chains" and peptide backbones: A comparative ab initio study.
Law JM; Setiadi DH; Chass GA; Csizmadia IG; Viskolcz B
J Phys Chem A; 2005 Jan; 109(3):520-33. PubMed ID: 16833374
[TBL] [Abstract][Full Text] [Related]
24. Understanding the structural characteristics of compstatin by conformational space annealing.
Song MK; Kim SY; Lee J
Biophys Chem; 2005 Apr; 115(2-3):201-7. PubMed ID: 15752605
[TBL] [Abstract][Full Text] [Related]
25. Characterization of the conformational behavior of peptide Contryphan Vn: a theoretical study.
D'Alessandro M; Paci M; Amadei A
Biopolymers; 2004 Aug; 74(6):448-56. PubMed ID: 15274088
[TBL] [Abstract][Full Text] [Related]
26. Unexpectedly fast cis/trans isomerization of Xaa-Pro peptide bonds in disulfide-constrained cyclic peptides.
Shi T; Spain SM; Rabenstein DL
J Am Chem Soc; 2004 Jan; 126(3):790-6. PubMed ID: 14733553
[TBL] [Abstract][Full Text] [Related]
27. Bioactive peptides: solid state, solution and molecular dynamics studies of a cyclolinopeptide A-related cystinyl cyclopentapeptide.
Rossi F; Saviano M; Di Blasio B; Zanotti G; Maione AM; Tancredi T; Pedone C
Biopolymers; 1994 Feb; 34(2):273-84. PubMed ID: 8142593
[TBL] [Abstract][Full Text] [Related]
28. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
Seibert MM; Patriksson A; Hess B; van der Spoel D
J Mol Biol; 2005 Nov; 354(1):173-83. PubMed ID: 16236315
[TBL] [Abstract][Full Text] [Related]
29. Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin.
Shi YH; Song YL; Lin DH; Tan J; Roller PP; Li Q; Long YQ; Song GQ
Biochem Biophys Res Commun; 2005 May; 330(4):1254-61. PubMed ID: 15823578
[TBL] [Abstract][Full Text] [Related]
30. The effect of motional averaging on the calculation of NMR-derived structural properties.
Daura X; Antes I; van Gunsteren WF; Thiel W; Mark AE
Proteins; 1999 Sep; 36(4):542-55. PubMed ID: 10450095
[TBL] [Abstract][Full Text] [Related]
31. Origins of helix-coil switching in a light-sensitive peptide.
Burns DC; Flint DG; Kumita JR; Feldman HJ; Serrano L; Zhang Z; Smart OS; Woolley GA
Biochemistry; 2004 Dec; 43(49):15329-38. PubMed ID: 15581345
[TBL] [Abstract][Full Text] [Related]
32. Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study.
Graf J; Nguyen PH; Stock G; Schwalbe H
J Am Chem Soc; 2007 Feb; 129(5):1179-89. PubMed ID: 17263399
[TBL] [Abstract][Full Text] [Related]
33. Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions.
Olson MA; Feig M; Brooks CL
J Comput Chem; 2008 Apr; 29(5):820-31. PubMed ID: 17876760
[TBL] [Abstract][Full Text] [Related]
34. Dynamic structure of disulfide-removed linear analogs of tachyplesin-I in the lipid bilayer from solid-state NMR.
Doherty T; Waring AJ; Hong M
Biochemistry; 2008 Jan; 47(4):1105-16. PubMed ID: 18163648
[TBL] [Abstract][Full Text] [Related]
35. Characterization of the conformational space of a triple-stranded beta-sheet forming peptide with molecular dynamics simulations.
Soto P; Colombo G
Proteins; 2004 Dec; 57(4):734-46. PubMed ID: 15390268
[TBL] [Abstract][Full Text] [Related]
36. Vibrational circular dichroism and IR spectral analysis as a test of theoretical conformational modeling for a cyclic hexapeptide.
Bour P; Kim J; Kapitan J; Hammer RP; Huang R; Wu L; Keiderling TA
Chirality; 2008 Nov; 20(10):1104-19. PubMed ID: 18506832
[TBL] [Abstract][Full Text] [Related]
37. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
Patel S; Sasidhar YU
J Pept Sci; 2007 Oct; 13(10):679-92. PubMed ID: 17787022
[TBL] [Abstract][Full Text] [Related]
38. Solution structure of contryphan-R, a naturally occurring disulfide-bridged octapeptide containing D-tryptophan: comparison with protein loops.
Pallaghy PK; Melnikova AP; Jimenez EC; Olivera BM; Norton RS
Biochemistry; 1999 Aug; 38(35):11553-9. PubMed ID: 10471307
[TBL] [Abstract][Full Text] [Related]
39. Computational studies on the backbone-dependent side-chain orientation induced by the (S,S)-CXC motif.
Stavrakoudis A; Tsikaris V
J Pept Sci; 2008 Dec; 14(12):1259-70. PubMed ID: 18816509
[TBL] [Abstract][Full Text] [Related]
40. Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: pathway prediction and reconciliation of X-ray crystallographic and NMR solution data.
Trzesniak D; van Gunsteren WF
Protein Sci; 2006 Nov; 15(11):2544-51. PubMed ID: 17075133
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]