BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

88 related articles for article (PubMed ID: 15780270)

  • 1. The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides.
    Nahmany A; Strino F; Rosen J; Kemp GJ; Nyholm PG
    Carbohydr Res; 2005 Apr; 340(5):1059-64. PubMed ID: 15780270
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The conformations of the O-specific polysaccharides of Shigella dysenteriae type 4 and Escherichia coli O159 studied with molecular mechanics (MM3) filtered systematic search.
    Rosen J; Robobi A; Nyholm PG
    Carbohydr Res; 2004 Apr; 339(5):961-6. PubMed ID: 15010303
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.
    Strino F; Nahmany A; Rosen J; Kemp GJ; Sá-correia I; Nyholm PG
    Carbohydr Res; 2005 Apr; 340(5):1019-24. PubMed ID: 15780266
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Conformational analysis of complex oligosaccharides: the CICADA approach to the uromodulin O-glycans.
    Cioci G; Rivet A; Koca J; Pérez S
    Carbohydr Res; 2004 Apr; 339(5):949-59. PubMed ID: 15010302
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Conformation of the O-specific polysaccharide of Shigella dysenteriae type 1: molecular modeling shows a helical structure with efficient exposure of the antigenic determinant alpha-L-Rhap-(1-->2)-alpha-D-Galp.
    Nyholm PG; Mulard LA; Miller CE; Lew T; Olin R; Glaudemans CP
    Glycobiology; 2001 Nov; 11(11):945-55. PubMed ID: 11744629
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Conformation of the branched O-specific polysaccharide of Shigella dysenteriae type 2: molecular mechanics calculations show a compact helical structure exposing an epitope which potentially mimics galabiose.
    Rosen J; Robobi A; Nyholm PG
    Carbohydr Res; 2002 Oct; 337(18):1633-40. PubMed ID: 12423964
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Conformational study of asialo-GM1 (GA1) ganglioside.
    Park HJ; Jhon GJ; Han SJ; Kang YK
    Biopolymers; 1997; 42(1):19-35. PubMed ID: 9209156
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural studies of the O-antigenic polysaccharides from Shigella dysenteriae type 3 and Escherichia coli O124, a reinvestigation.
    Jonsson KH; Weintraub A; Widmalm G
    Carbohydr Res; 2006 Dec; 341(18):2986-9. PubMed ID: 17081507
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Conformational analysis of a tetrasaccharide based on NMR spectroscopy and molecular dynamics simulations.
    Landersjö C; Jansson JL; Maliniak A; Widmalm G
    J Phys Chem B; 2005 Sep; 109(36):17320-6. PubMed ID: 16853211
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The O-polysaccharide of Escherichia coli O112ac has the same structure as that of Shigella dysenteriae type 2 but is devoid of O-acetylation: a revision of the S. dysenteriae type 2 O-polysaccharide structure.
    Perepelov AV; Weintraub A; Liu B; Senchenkova SN; Shashkov AS; Feng L; Wang L; Widmalm G; Knirel YA
    Carbohydr Res; 2008 Apr; 343(5):977-81. PubMed ID: 18308298
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Monte Carlo-based searching as a tool to study carbohydrate structure.
    Dowd MK; Kiely DE; Zhang J
    Carbohydr Res; 2011 Jul; 346(9):1140-8. PubMed ID: 21536262
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Conformational flexibility and dynamics of two (1-->6)-linked disaccharides related to an oligosaccharide epitope expressed on malignant tumour cells.
    Olsson U; Säwén E; Stenutz R; Widmalm G
    Chemistry; 2009 Sep; 15(35):8886-94. PubMed ID: 19637158
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The flexibility of the Le(a)Le(x) tumor associated antigen central fragment studied by systematic and stochastic searches as well as dynamic simulations.
    Jackson TA; Robertson V; Imberty A; Auzanneau FI
    Bioorg Med Chem; 2009 Feb; 17(4):1514-26. PubMed ID: 19196517
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Generating conformer ensembles using a multiobjective genetic algorithm.
    Vainio MJ; Johnson MS
    J Chem Inf Model; 2007; 47(6):2462-74. PubMed ID: 17892278
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Energy-directed tree search: an efficient systematic algorithm for finding the lowest energy conformation of molecules.
    Izgorodina EI; Lin CY; Coote ML
    Phys Chem Chem Phys; 2007 May; 9(20):2507-16. PubMed ID: 17508083
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conformational structure of gaseous 3-chloropropanoyl chloride by electron diffraction, normal coordinate analysis, and ab initio molecular orbital, and density functional theory calculations.
    Johansen TH; Hagen K
    J Phys Chem A; 2006 Sep; 110(38):11136-44. PubMed ID: 16986848
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MM3 parametrization of four- and five-coordinated rhenium complexes by a genetic algorithm--which factors influence the optimization performance?
    Strassner T; Busold M; Herrmann WA
    J Comput Chem; 2002 Jan; 23(2):282-90. PubMed ID: 11924740
    [TBL] [Abstract][Full Text] [Related]  

  • 18. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
    Spassov VZ; Flook PK; Yan L
    Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Conformational analysis of oligosaccharides and polysaccharides using molecular dynamics simulations.
    Frank M
    Methods Mol Biol; 2015; 1273():359-77. PubMed ID: 25753720
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Determining the solution conformational entropy of O-linked oligosaccharides at quasi-physiological conditions: size-exclusion chromatography and molecular dynamics.
    Boone MA; Nymeyer H; Striegel AM
    Carbohydr Res; 2008 Jan; 343(1):132-8. PubMed ID: 17950712
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.