These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

331 related articles for article (PubMed ID: 15784265)

  • 1. The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking.
    Smith GR; Sternberg MJ; Bates PA
    J Mol Biol; 2005 Apr; 347(5):1077-101. PubMed ID: 15784265
    [TBL] [Abstract][Full Text] [Related]  

  • 2. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The impact of protein flexibility on protein-protein docking.
    Ehrlich LP; Nilges M; Wade RC
    Proteins; 2005 Jan; 58(1):126-33. PubMed ID: 15515181
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Constructing ensembles of flexible fragments in native proteins by iterative stochastic elimination is relevant to protein-protein interfaces.
    Noy E; Tabakman T; Goldblum A
    Proteins; 2007 Aug; 68(3):702-11. PubMed ID: 17510963
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach.
    Gohlke H; Kuhn LA; Case DA
    Proteins; 2004 Aug; 56(2):322-37. PubMed ID: 15211515
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A continuum model for protein-protein interactions: application to the docking problem.
    Jackson RM; Sternberg MJ
    J Mol Biol; 1995 Jul; 250(2):258-75. PubMed ID: 7541840
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Flexibility and conformational entropy in protein-protein binding.
    Grünberg R; Nilges M; Leckner J
    Structure; 2006 Apr; 14(4):683-93. PubMed ID: 16615910
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accounting for loop flexibility during protein-protein docking.
    Bastard K; Prévost C; Zacharias M
    Proteins; 2006 Mar; 62(4):956-69. PubMed ID: 16372349
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular flexibility in protein-DNA interactions.
    Günther S; Rother K; Frömmel C
    Biosystems; 2006 Aug; 85(2):126-36. PubMed ID: 16488073
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
    Eberini I; Guerini Rocco A; Ientile AR; Baptista AM; Gianazza E; Tomaselli S; Molinari H; Ragona L
    Proteins; 2008 Jun; 71(4):1889-98. PubMed ID: 18175325
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Examination of shape complementarity in docking of unbound proteins.
    Norel R; Petrey D; Wolfson HJ; Nussinov R
    Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Influence of conformational flexibility on complexation-induced changes in chemical shift in a neocarzinostatin protein-ligand complex.
    Cioffi M; Hunter CA; Packer MJ
    J Med Chem; 2008 Aug; 51(15):4488-95. PubMed ID: 18624396
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy.
    Erickson JA; Jalaie M; Robertson DH; Lewis RA; Vieth M
    J Med Chem; 2004 Jan; 47(1):45-55. PubMed ID: 14695819
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Complementarity of structure ensembles in protein-protein binding.
    Grünberg R; Leckner J; Nilges M
    Structure; 2004 Dec; 12(12):2125-36. PubMed ID: 15576027
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Incorporating receptor flexibility in the molecular design of protein interfaces.
    Li L; Liang S; Pilcher MM; Meroueh SO
    Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effective handling of induced-fit motion in flexible docking.
    Mizutani MY; Takamatsu Y; Ichinose T; Nakamura K; Itai A
    Proteins; 2006 Jun; 63(4):878-91. PubMed ID: 16532451
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HIV-1 TAR RNA spontaneously undergoes relevant apo-to-holo conformational transitions in molecular dynamics and constrained geometrical simulations.
    Fulle S; Christ NA; Kestner E; Gohlke H
    J Chem Inf Model; 2010 Aug; 50(8):1489-501. PubMed ID: 20726603
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Docking unbound proteins with MIAX: a novel algorithm for protein-protein soft docking.
    Del Carpio Munoz CA; Peissker T; Yoshimori A; Ichiishi E
    Genome Inform; 2003; 14():238-49. PubMed ID: 15706538
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identification of near-native structures by clustering protein docking conformations.
    Lorenzen S; Zhang Y
    Proteins; 2007 Jul; 68(1):187-94. PubMed ID: 17397057
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.