235 related articles for article (PubMed ID: 15838120)
21. Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood.
Berger SA; Krompass D; Stamatakis A
Syst Biol; 2011 May; 60(3):291-302. PubMed ID: 21436105
[TBL] [Abstract][Full Text] [Related]
22. Column sorting: rapid calculation of the phylogenetic likelihood function.
Kosakovsky Pond SL; Muse SV
Syst Biol; 2004 Oct; 53(5):685-92. PubMed ID: 15545249
[TBL] [Abstract][Full Text] [Related]
23. A parallel approach to multiple sequences alignment and phylogenetic tree node labelling.
Wang J; Zhu M
Int J Comput Biol Drug Des; 2010; 3(3):226-36. PubMed ID: 21228457
[TBL] [Abstract][Full Text] [Related]
24. Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference.
Brauer MJ; Holder MT; Dries LA; Zwickl DJ; Lewis PO; Hillis DM
Mol Biol Evol; 2002 Oct; 19(10):1717-26. PubMed ID: 12270898
[TBL] [Abstract][Full Text] [Related]
25. Quartet-mapping, a generalization of the likelihood-mapping procedure.
Nieselt-Struwe K; von Haeseler A
Mol Biol Evol; 2001 Jul; 18(7):1204-19. PubMed ID: 11420361
[TBL] [Abstract][Full Text] [Related]
26. Simultaneous statistical multiple alignment and phylogeny reconstruction.
Fleissner R; Metzler D; von Haeseler A
Syst Biol; 2005 Aug; 54(4):548-61. PubMed ID: 16085574
[TBL] [Abstract][Full Text] [Related]
27. A structural EM algorithm for phylogenetic inference.
Friedman N; Ninio M; Pe'er I; Pupko T
J Comput Biol; 2002; 9(2):331-53. PubMed ID: 12015885
[TBL] [Abstract][Full Text] [Related]
28. Maximum-likelihood analysis using TREE-PUZZLE.
Schmidt HA; von Haeseler A
Curr Protoc Bioinformatics; 2007 Mar; Chapter 6():Unit 6.6. PubMed ID: 18428792
[TBL] [Abstract][Full Text] [Related]
29. Maximum likelihood of phylogenetic networks.
Jin G; Nakhleh L; Snir S; Tuller T
Bioinformatics; 2006 Nov; 22(21):2604-11. PubMed ID: 16928736
[TBL] [Abstract][Full Text] [Related]
30. Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and detailed phylogenetic analysis.
Mallatt J; Craig CW; Yoder MJ
Mol Phylogenet Evol; 2012 Sep; 64(3):603-17. PubMed ID: 22641172
[TBL] [Abstract][Full Text] [Related]
31. Calculating the evolutionary rates of different genes: a fast, accurate estimator with applications to maximum likelihood phylogenetic analysis.
Bevan RB; Lang BF; Bryant D
Syst Biol; 2005 Dec; 54(6):900-15. PubMed ID: 16282169
[TBL] [Abstract][Full Text] [Related]
32. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.
Matsen FA; Kodner RB; Armbrust EV
BMC Bioinformatics; 2010 Oct; 11():538. PubMed ID: 21034504
[TBL] [Abstract][Full Text] [Related]
33. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
34. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
Nguyen MA; Klaere S; von Haeseler A
Mol Biol Evol; 2011 Jan; 28(1):143-52. PubMed ID: 20643866
[TBL] [Abstract][Full Text] [Related]
35. Toward extracting all phylogenetic information from matrices of evolutionary distances.
Roch S
Science; 2010 Mar; 327(5971):1376-9. PubMed ID: 20223986
[TBL] [Abstract][Full Text] [Related]
36. Reconstructing phylogeny by quadratically approximated maximum likelihood.
Woodhams MD; Hendy MD
Bioinformatics; 2004 Aug; 20 Suppl 1():i348-54. PubMed ID: 15262819
[TBL] [Abstract][Full Text] [Related]
37. Efficient inference on known phylogenetic trees using Poisson regression.
Rosset S
Bioinformatics; 2007 Jan; 23(2):e142-7. PubMed ID: 17237083
[TBL] [Abstract][Full Text] [Related]
38. The Tree Reconstruction Game: Phylogenetic Reconstruction Using Reinforcement Learning.
Azouri D; Granit O; Alburquerque M; Mansour Y; Pupko T; Mayrose I
Mol Biol Evol; 2024 Jun; 41(6):. PubMed ID: 38829798
[TBL] [Abstract][Full Text] [Related]
39. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
Waddell PJ; Kishino H; Ota R
Genome Inform; 2002; 13():82-92. PubMed ID: 14571377
[TBL] [Abstract][Full Text] [Related]
40. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees.
Liu K; Raghavan S; Nelesen S; Linder CR; Warnow T
Science; 2009 Jun; 324(5934):1561-4. PubMed ID: 19541996
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
