109 related articles for article (PubMed ID: 15848751)
1. Linear indices of the 'macromolecular graph's nucleotides adjacency matrix' as a promising approach for bioinformatics studies. Part 1: prediction of paromomycin's affinity constant with HIV-1 psi-RNA packaging region.
Marrero Ponce Y; Castillo Garit JA; Nodarse D
Bioorg Med Chem; 2005 May; 13(10):3397-404. PubMed ID: 15848751
[TBL] [Abstract][Full Text] [Related]
2. Nucleotide's bilinear indices: novel bio-macromolecular descriptors for bioinformatics studies of nucleic acids. I. Prediction of paromomycin's affinity constant with HIV-1 Psi-RNA packaging region.
Marrero-Ponce Y; Ortega-Broche SE; Díaz YE; Alvarado YJ; Cubillan N; Cardoso GC; Torrens F; Pérez-Giménez F
J Theor Biol; 2009 Jul; 259(2):229-41. PubMed ID: 19272394
[TBL] [Abstract][Full Text] [Related]
3. Protein linear indices of the 'macromolecular pseudograph alpha-carbon atom adjacency matrix' in bioinformatics. Part 1: prediction of protein stability effects of a complete set of alanine substitutions in Arc repressor.
Marrero-Ponce Y; Medina-Marrero R; Castillo-Garit JA; Romero-Zaldivar V; Torrens F; Castro EA
Bioorg Med Chem; 2005 Apr; 13(8):3003-15. PubMed ID: 15781410
[TBL] [Abstract][Full Text] [Related]
4. Markovian negentropies in bioinformatics. 1. A picture of footprints after the interaction of the HIV-1 Psi-RNA packaging region with drugs.
Díaz HG; de Armas RR; Molina R
Bioinformatics; 2003 Nov; 19(16):2079-87. PubMed ID: 14594713
[TBL] [Abstract][Full Text] [Related]
5. 3D-chiral quadratic indices of the 'molecular pseudograph's atom adjacency matrix' and their application to central chirality codification: classification of ACE inhibitors and prediction of sigma-receptor antagonist activities.
Ponce YM; Diaz HG; Zaldivar VR; Torrens F; Castro EA
Bioorg Med Chem; 2004 Oct; 12(20):5331-42. PubMed ID: 15388160
[TBL] [Abstract][Full Text] [Related]
6. Linear indices of the "molecular pseudograph's atom adjacency matrix": definition, significance-interpretation, and application to QSAR analysis of flavone derivatives as HIV-1 integrase inhibitors.
Marrero-Ponce Y
J Chem Inf Comput Sci; 2004; 44(6):2010-26. PubMed ID: 15554670
[TBL] [Abstract][Full Text] [Related]
7. Total and local (atom and atom type) molecular quadratic indices: significance interpretation, comparison to other molecular descriptors, and QSPR/QSAR applications.
Ponce YM
Bioorg Med Chem; 2004 Dec; 12(24):6351-69. PubMed ID: 15556754
[TBL] [Abstract][Full Text] [Related]
8. Atom-based 3D-chiral quadratic indices. Part 2: prediction of the corticosteroid-binding globulinbinding affinity of the 31 benchmark steroids data set.
Castillo-Garit JA; Marrero-Ponce Y; Torrens F
Bioorg Med Chem; 2006 Apr; 14(7):2398-408. PubMed ID: 16325409
[TBL] [Abstract][Full Text] [Related]
9. Vibrational Markovian modelling of footprints after the interaction of antibiotics with the packaging region of HIV type 1.
Díaz HG; de Armas RR; Molina R
Bull Math Biol; 2003 Nov; 65(6):991-1002. PubMed ID: 14607285
[TBL] [Abstract][Full Text] [Related]
10. Specificity of neomycin analogues bound to the packaging region of human immunodeficiency virus type 1 RNA.
McPike MP; Goodisman J; Dabrowiak JC
Bioorg Med Chem; 2004 Apr; 12(8):1835-43. PubMed ID: 15051052
[TBL] [Abstract][Full Text] [Related]
11. TOMOCOMD-CAMPS and protein bilinear indices--novel bio-macromolecular descriptors for protein research: I. Predicting protein stability effects of a complete set of alanine substitutions in the Arc repressor.
Ortega-Broche SE; Marrero-Ponce Y; Díaz YE; Torrens F; Pérez-Giménez F
FEBS J; 2010 Aug; 277(15):3118-46. PubMed ID: 20584078
[TBL] [Abstract][Full Text] [Related]
12. Prediction of anti-HIV-1 activity of a series of tetrapyrrole molecules.
Vanyúr R; Héberger K; Jakus J
J Chem Inf Comput Sci; 2003; 43(6):1829-36. PubMed ID: 14632429
[TBL] [Abstract][Full Text] [Related]
13. Atom, atom-type, and total linear indices of the "molecular pseudograph's atom adjacency matrix": application to QSPR/QSAR studies of organic compounds.
Ponce YM; Garit JA; Torrens F; Zaldivar VR; Castro EA
Molecules; 2004 Dec; 9(12):1100-23. PubMed ID: 18007507
[TBL] [Abstract][Full Text] [Related]
14. Ligand-based virtual screening and in silico design of new antimalarial compounds using nonstochastic and stochastic total and atom-type quadratic maps.
Marrero-Ponce Y; Iyarreta-Veitía M; Montero-Torres A; Romero-Zaldivar C; Brandt CA; Avila PE; Kirchgatter K; Machado Y
J Chem Inf Model; 2005; 45(4):1082-100. PubMed ID: 16045304
[TBL] [Abstract][Full Text] [Related]
15. Protein quadratic indices of the "macromolecular pseudograph's alpha-carbon atom adjacency matrix". 1. Prediction of Arc repressor alanine-mutant's stability.
Ponce YM; Marrero RM; Castro EA; Ramos de Armas R; Díaz HG; Zaldivar VR; Torrens F
Molecules; 2004 Dec; 9(12):1124-47. PubMed ID: 18007508
[TBL] [Abstract][Full Text] [Related]
16. Footprinting and circular dichroism studies on paromomycin binding to the packaging region of human immunodeficiency virus type-1.
McPike MP; Goodisman J; Dabrowiak JC
Bioorg Med Chem; 2002 Nov; 10(11):3663-72. PubMed ID: 12213482
[TBL] [Abstract][Full Text] [Related]
17. Stochastic-based descriptors studying biopolymers biological properties: extended MARCH-INSIDE methodology describing antibacterial activity of lactoferricin derivatives.
de Armas RR; Díaz HG; Molina R; Uriarte E
Biopolymers; 2005 Apr; 77(5):247-56. PubMed ID: 15682438
[TBL] [Abstract][Full Text] [Related]
18. Bond-based global and local (bond, group and bond-type) quadratic indices and their applications to computer-aided molecular design. 1. QSPR studies of diverse sets of organic chemicals.
Marrero-Ponce Y; Torrens F; Alvarado YJ; Rotondo R
J Comput Aided Mol Des; 2006; 20(10-11):685-701. PubMed ID: 17186417
[TBL] [Abstract][Full Text] [Related]
19. Cooperative and specific binding of Vif to the 5' region of HIV-1 genomic RNA.
Henriet S; Richer D; Bernacchi S; Decroly E; Vigne R; Ehresmann B; Ehresmann C; Paillart JC; Marquet R
J Mol Biol; 2005 Nov; 354(1):55-72. PubMed ID: 16236319
[TBL] [Abstract][Full Text] [Related]
20. Quantitative structure activity relationship (QSAR) of piperine analogs for bacterial NorA efflux pump inhibitors.
Nargotra A; Sharma S; Koul JL; Sangwan PL; Khan IA; Kumar A; Taneja SC; Koul S
Eur J Med Chem; 2009 Oct; 44(10):4128-35. PubMed ID: 19523722
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]