These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

320 related articles for article (PubMed ID: 15852513)

  • 1. Dizzy: stochastic simulation of large-scale genetic regulatory networks.
    Ramsey S; Orrell D; Bolouri H
    J Bioinform Comput Biol; 2005 Apr; 3(2):415-36. PubMed ID: 15852513
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Dizzy: stochastic simulation of large-scale genetic regulatory networks (supplementary material).
    Ramsey S; Orrell D; Bolouri H
    J Bioinform Comput Biol; 2005 Apr; 3(2):437-54. PubMed ID: 15852514
    [No Abstract]   [Full Text] [Related]  

  • 3. The need for speed in stochastic simulation.
    Lok L
    Nat Biotechnol; 2004 Aug; 22(8):964-5. PubMed ID: 15286647
    [No Abstract]   [Full Text] [Related]  

  • 4. In silico simulation of biological network dynamics.
    Salwinski L; Eisenberg D
    Nat Biotechnol; 2004 Aug; 22(8):1017-9. PubMed ID: 15235611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways.
    Chiam KH; Tan CM; Bhargava V; Rajagopal G
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Nov; 74(5 Pt 1):051910. PubMed ID: 17279942
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Modeling and simulation of intracellular dynamics: choosing an appropriate framework.
    Wolkenhauer O; Ullah M; Kolch W; Cho KH
    IEEE Trans Nanobioscience; 2004 Sep; 3(3):200-7. PubMed ID: 15473072
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks.
    Puchałka J; Kierzek AM
    Biophys J; 2004 Mar; 86(3):1357-72. PubMed ID: 14990466
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Grid cellware: the first grid-enabled tool for modelling and simulating cellular processes.
    Dhar PK; Meng TC; Somani S; Ye L; Sakharkar K; Krishnan A; Ridwan AB; Wah SH; Chitre M; Hao Z
    Bioinformatics; 2005 Apr; 21(7):1284-7. PubMed ID: 15546936
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multiscale Hy3S: hybrid stochastic simulation for supercomputers.
    Salis H; Sotiropoulos V; Kaznessis YN
    BMC Bioinformatics; 2006 Feb; 7():93. PubMed ID: 16504125
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A method for estimating stochastic noise in large genetic regulatory networks.
    Orrell D; Ramsey S; de Atauri P; Bolouri H
    Bioinformatics; 2005 Jan; 21(2):208-17. PubMed ID: 15319259
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Modeling and simulation of molecular biology systems using petri nets: modeling goals of various approaches.
    Hardy S; Robillard PN
    J Bioinform Comput Biol; 2004 Dec; 2(4):595-613. PubMed ID: 15617157
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metabolic control analysis under uncertainty: framework development and case studies.
    Wang L; Birol I; Hatzimanikatis V
    Biophys J; 2004 Dec; 87(6):3750-63. PubMed ID: 15465856
    [TBL] [Abstract][Full Text] [Related]  

  • 13. On the attenuation and amplification of molecular noise in genetic regulatory networks.
    Chen BS; Wang YC
    BMC Bioinformatics; 2006 Feb; 7():52. PubMed ID: 16457708
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
    Spicher A; Michel O; Cieslak M; Giavitto JL; Prusinkiewicz P
    Biosystems; 2008 Mar; 91(3):458-72. PubMed ID: 17728055
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Stochastic model reduction using a modified Hill-type kinetic rate law.
    Smadbeck P; Kaznessis Y
    J Chem Phys; 2012 Dec; 137(23):234109. PubMed ID: 23267473
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks.
    Sirava M; Schäfer T; Eiglsperger M; Kaufmann M; Kohlbacher O; Bornberg-Bauer E; Lenhof HP
    Bioinformatics; 2002; 18 Suppl 2():S219-30. PubMed ID: 12386006
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Probabilistic representation of gene regulatory networks.
    Mao L; Resat H
    Bioinformatics; 2004 Sep; 20(14):2258-69. PubMed ID: 15073019
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tools for kinetic modeling of biochemical networks.
    Alves R; Antunes F; Salvador A
    Nat Biotechnol; 2006 Jun; 24(6):667-72. PubMed ID: 16763599
    [TBL] [Abstract][Full Text] [Related]  

  • 19. WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.
    Lee DY; Yun C; Cho A; Hou BK; Park S; Lee SY
    Bioinformatics; 2006 May; 22(9):1150-1. PubMed ID: 16543278
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Noise in genetic and neural networks.
    Swain PS; Longtin A
    Chaos; 2006 Jun; 16(2):026101. PubMed ID: 16822033
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.