These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

286 related articles for article (PubMed ID: 15860779)

  • 1. A benchmark of multiple sequence alignment programs upon structural RNAs.
    Gardner PP; Wilm A; Washietl S
    Nucleic Acids Res; 2005; 33(8):2433-9. PubMed ID: 15860779
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Structural alignment of RNA with triple helix structure.
    Wong TK; Yiu SM
    J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y; Asai K
    Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences.
    Fontaine A; de Monte A; Touzet H
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W14-8. PubMed ID: 18515348
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multi-objective pairwise RNA sequence alignment.
    Taneda A
    Bioinformatics; 2010 Oct; 26(19):2383-90. PubMed ID: 20679330
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Memory efficient algorithms for structural alignment of RNAs with pseudoknots.
    Wong TK; Chiu YS; Lam TW; Yiu SM
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):161-8. PubMed ID: 21464506
    [TBL] [Abstract][Full Text] [Related]  

  • 7. R-Coffee: a method for multiple alignment of non-coding RNA.
    Wilm A; Higgins DG; Notredame C
    Nucleic Acids Res; 2008 May; 36(9):e52. PubMed ID: 18420654
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 9. StructMiner: a tool for alignment and detection of conserved secondary structure.
    Yang Q; Blanchette M
    Genome Inform; 2004; 15(2):102-11. PubMed ID: 15706496
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S48. PubMed ID: 21342580
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
    Bellamy-Royds AB; Turcotte M
    BMC Bioinformatics; 2007 Jun; 8():190. PubMed ID: 17559658
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Local RNA structure alignment with incomplete sequence.
    Kolbe DL; Eddy SR
    Bioinformatics; 2009 May; 25(10):1236-43. PubMed ID: 19304875
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Pair hidden Markov models on tree structures.
    Sakakibara Y
    Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
    Katoh K; Toh H
    BMC Bioinformatics; 2008 Apr; 9():212. PubMed ID: 18439255
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A memory efficient method for structure-based RNA multiple alignment.
    DeBlasio D; Bruand J; Zhang S
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.
    Bauer M; Klau GW; Reinert K
    BMC Bioinformatics; 2007 Jul; 8():271. PubMed ID: 17662141
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PARTS: probabilistic alignment for RNA joinT secondary structure prediction.
    Harmanci AO; Sharma G; Mathews DH
    Nucleic Acids Res; 2008 Apr; 36(7):2406-17. PubMed ID: 18304945
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach.
    Sahraeian SM; Yoon BJ
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S38. PubMed ID: 21342569
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA structural alignments, part II: non-Sankoff approaches for structural alignments.
    Asai K; Hamada M
    Methods Mol Biol; 2014; 1097():291-301. PubMed ID: 24639165
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
    Siebert S; Backofen R
    Bioinformatics; 2005 Aug; 21(16):3352-9. PubMed ID: 15972285
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.