BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

360 related articles for article (PubMed ID: 15882054)

  • 21. Incremental window-based protein sequence alignment algorithms.
    Rangwala H; Karypis G
    Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Recurring local sequence motifs in proteins.
    Han KF; Baker D
    J Mol Biol; 1995 Aug; 251(1):176-87. PubMed ID: 7643386
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A new index to find regions showing an unexpected variability or conservation in sequence alignments.
    Dopazo J
    Comput Appl Biosci; 1997 Jun; 13(3):313-7. PubMed ID: 9183538
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Predicting functionally important residues from sequence conservation.
    Capra JA; Singh M
    Bioinformatics; 2007 Aug; 23(15):1875-82. PubMed ID: 17519246
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
    Kinjo AR; Nishikawa K
    Bioinformatics; 2004 Nov; 20(16):2504-8. PubMed ID: 15130930
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Relationships between functional subclasses and information contained in active-site and ligand-binding residues in diverse superfamilies.
    Nagao C; Nagano N; Mizuguchi K
    Proteins; 2010 Aug; 78(10):2369-84. PubMed ID: 20544971
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Estimating quality of template-based protein models by alignment stability.
    Chen H; Kihara D
    Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Networks of coevolving sites in structural and functional domains of serpin proteins.
    Buck MJ; Atchley WR
    Mol Biol Evol; 2005 Jul; 22(7):1627-34. PubMed ID: 15858204
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D; Leo-Macias A; Ortiz AR
    Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
    [TBL] [Abstract][Full Text] [Related]  

  • 30. CoSMoS: Conserved Sequence Motif Search in the proteome.
    Liu XI; Korde N; Jakob U; Leichert LI
    BMC Bioinformatics; 2006 Jan; 7():37. PubMed ID: 16433915
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Probabilistic description of protein alignments for sequences and structures.
    Koike R; Kinoshita K; Kidera A
    Proteins; 2004 Jul; 56(1):157-66. PubMed ID: 15162495
    [TBL] [Abstract][Full Text] [Related]  

  • 33. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
    Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Potential folding-function interrelationship in proteins.
    Barzilai A; Kumar S; Wolfson H; Nussinov R
    Proteins; 2004 Sep; 56(4):635-49. PubMed ID: 15281117
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Correlated mutation analyses on very large sequence families.
    Oliveira L; Paiva AC; Vriend G
    Chembiochem; 2002 Oct; 3(10):1010-7. PubMed ID: 12362367
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments.
    Chang MS; Benner SA
    J Mol Biol; 2004 Aug; 341(2):617-31. PubMed ID: 15276848
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Local multiple alignment of numerical sequences: detection of subtle motifs from protein sequences and structures.
    Akutsu T; Horimoto K
    Genome Inform; 2001; 12():83-92. PubMed ID: 11791227
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
    Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
    PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Evolution of prokaryotic subtilases: genome-wide analysis reveals novel subfamilies with different catalytic residues.
    Siezen RJ; Renckens B; Boekhorst J
    Proteins; 2007 May; 67(3):681-94. PubMed ID: 17348030
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 18.