360 related articles for article (PubMed ID: 15882054)
21. Incremental window-based protein sequence alignment algorithms.
Rangwala H; Karypis G
Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
[TBL] [Abstract][Full Text] [Related]
22. Recurring local sequence motifs in proteins.
Han KF; Baker D
J Mol Biol; 1995 Aug; 251(1):176-87. PubMed ID: 7643386
[TBL] [Abstract][Full Text] [Related]
23. A new index to find regions showing an unexpected variability or conservation in sequence alignments.
Dopazo J
Comput Appl Biosci; 1997 Jun; 13(3):313-7. PubMed ID: 9183538
[TBL] [Abstract][Full Text] [Related]
24. Predicting functionally important residues from sequence conservation.
Capra JA; Singh M
Bioinformatics; 2007 Aug; 23(15):1875-82. PubMed ID: 17519246
[TBL] [Abstract][Full Text] [Related]
25. Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
Kinjo AR; Nishikawa K
Bioinformatics; 2004 Nov; 20(16):2504-8. PubMed ID: 15130930
[TBL] [Abstract][Full Text] [Related]
26. Relationships between functional subclasses and information contained in active-site and ligand-binding residues in diverse superfamilies.
Nagao C; Nagano N; Mizuguchi K
Proteins; 2010 Aug; 78(10):2369-84. PubMed ID: 20544971
[TBL] [Abstract][Full Text] [Related]
27. Estimating quality of template-based protein models by alignment stability.
Chen H; Kihara D
Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
[TBL] [Abstract][Full Text] [Related]
28. Networks of coevolving sites in structural and functional domains of serpin proteins.
Buck MJ; Atchley WR
Mol Biol Evol; 2005 Jul; 22(7):1627-34. PubMed ID: 15858204
[TBL] [Abstract][Full Text] [Related]
29. A new progressive-iterative algorithm for multiple structure alignment.
Lupyan D; Leo-Macias A; Ortiz AR
Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
[TBL] [Abstract][Full Text] [Related]
30. CoSMoS: Conserved Sequence Motif Search in the proteome.
Liu XI; Korde N; Jakob U; Leichert LI
BMC Bioinformatics; 2006 Jan; 7():37. PubMed ID: 16433915
[TBL] [Abstract][Full Text] [Related]
31. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
32. Probabilistic description of protein alignments for sequences and structures.
Koike R; Kinoshita K; Kidera A
Proteins; 2004 Jul; 56(1):157-66. PubMed ID: 15162495
[TBL] [Abstract][Full Text] [Related]
33. MUSTANG: a multiple structural alignment algorithm.
Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
[TBL] [Abstract][Full Text] [Related]
34. Potential folding-function interrelationship in proteins.
Barzilai A; Kumar S; Wolfson H; Nussinov R
Proteins; 2004 Sep; 56(4):635-49. PubMed ID: 15281117
[TBL] [Abstract][Full Text] [Related]
35. Correlated mutation analyses on very large sequence families.
Oliveira L; Paiva AC; Vriend G
Chembiochem; 2002 Oct; 3(10):1010-7. PubMed ID: 12362367
[TBL] [Abstract][Full Text] [Related]
36. Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments.
Chang MS; Benner SA
J Mol Biol; 2004 Aug; 341(2):617-31. PubMed ID: 15276848
[TBL] [Abstract][Full Text] [Related]
37. Local multiple alignment of numerical sequences: detection of subtle motifs from protein sequences and structures.
Akutsu T; Horimoto K
Genome Inform; 2001; 12():83-92. PubMed ID: 11791227
[TBL] [Abstract][Full Text] [Related]
38. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
39. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
[TBL] [Abstract][Full Text] [Related]
40. Evolution of prokaryotic subtilases: genome-wide analysis reveals novel subfamilies with different catalytic residues.
Siezen RJ; Renckens B; Boekhorst J
Proteins; 2007 May; 67(3):681-94. PubMed ID: 17348030
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]