259 related articles for article (PubMed ID: 15882449)
21. Computational biology: toward deciphering gene regulatory information in mammalian genomes.
Ji H; Wong WH
Biometrics; 2006 Sep; 62(3):645-63. PubMed ID: 16984301
[TBL] [Abstract][Full Text] [Related]
22. Identification of modules in Aspergillus niger by gene co-expression network analysis.
van den Berg RA; Braaksma M; van der Veen D; van der Werf MJ; Punt PJ; van der Oost J; de Graaff LH
Fungal Genet Biol; 2010 Jun; 47(6):539-50. PubMed ID: 20350613
[TBL] [Abstract][Full Text] [Related]
23. CREME: Cis-Regulatory Module Explorer for the human genome.
Sharan R; Ben-Hur A; Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W253-6. PubMed ID: 15215390
[TBL] [Abstract][Full Text] [Related]
24. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.
Kel AE; Kel-Margoulis OV; Farnham PJ; Bartley SM; Wingender E; Zhang MQ
J Mol Biol; 2001 May; 309(1):99-120. PubMed ID: 11491305
[TBL] [Abstract][Full Text] [Related]
25. Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example.
Yang W; Ng P; Zhao M; Wong TK; Yiu SM; Lau YL
BMC Genomics; 2008 Oct; 9():456. PubMed ID: 18831769
[TBL] [Abstract][Full Text] [Related]
26. Regulatory motif finding by logic regression.
Keles S; van der Laan MJ; Vulpe C
Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
[TBL] [Abstract][Full Text] [Related]
27. Comparative genomics of the Hlx homeobox gene and protein: conservation of structure and expression from fish to mammals.
Bates MD; Wells JM; Venkatesh B
Gene; 2005 Jun; 352():45-56. PubMed ID: 15935575
[TBL] [Abstract][Full Text] [Related]
28. Computational discovery of transcriptional regulatory rules.
Pham TH; Clemente JC; Satou K; Ho TB
Bioinformatics; 2005 Sep; 21 Suppl 2():ii101-7. PubMed ID: 16204087
[TBL] [Abstract][Full Text] [Related]
29. Comparative genomic analysis of vertebrate Hox3 and Hox4 genes.
Hadrys T; Prince V; Hunter M; Baker R; Rinkwitz S
J Exp Zool B Mol Dev Evol; 2004 Mar; 302(2):147-64. PubMed ID: 15054858
[TBL] [Abstract][Full Text] [Related]
30. Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements.
Hannenhalli SS; Middleton RP; Levy S; Perroud B; Holzwarth JA; McDonald K; Hannah SS
Osteoarthritis Cartilage; 2006 Aug; 14(8):830-8. PubMed ID: 16580849
[TBL] [Abstract][Full Text] [Related]
31. CompMoby: comparative MobyDick for detection of cis-regulatory motifs.
Chaivorapol C; Melton C; Wei G; Yeh RF; Ramalho-Santos M; Blelloch R; Li H
BMC Bioinformatics; 2008 Oct; 9():455. PubMed ID: 18950538
[TBL] [Abstract][Full Text] [Related]
32. CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.
Jegga AG; Gupta A; Gowrisankar S; Deshmukh MA; Connolly S; Finley K; Aronow BJ
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W408-11. PubMed ID: 15980500
[TBL] [Abstract][Full Text] [Related]
33. A discriminative model for identifying spatial cis-regulatory modules.
Segal E; Sharan R
J Comput Biol; 2005; 12(6):822-34. PubMed ID: 16108719
[TBL] [Abstract][Full Text] [Related]
34. Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.
Mathelier A; Lefebvre C; Zhang AW; Arenillas DJ; Ding J; Wasserman WW; Shah SP
Genome Biol; 2015 Apr; 16(1):84. PubMed ID: 25903198
[TBL] [Abstract][Full Text] [Related]
35. Identification of novel regulatory factor X (RFX) target genes by comparative genomics in Drosophila species.
Laurençon A; Dubruille R; Efimenko E; Grenier G; Bissett R; Cortier E; Rolland V; Swoboda P; Durand B
Genome Biol; 2007; 8(9):R195. PubMed ID: 17875208
[TBL] [Abstract][Full Text] [Related]
36. Identification of altered cis-regulatory elements in human disease.
Mathelier A; Shi W; Wasserman WW
Trends Genet; 2015 Feb; 31(2):67-76. PubMed ID: 25637093
[TBL] [Abstract][Full Text] [Related]
37. CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets.
Karanam S; Moreno CS
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W475-84. PubMed ID: 15215433
[TBL] [Abstract][Full Text] [Related]
38. A concept for ab initio prediction of cis-regulatory modules.
Ecker K; Welch L
In Silico Biol; 2009; 9(5-6):285-306. PubMed ID: 22430433
[TBL] [Abstract][Full Text] [Related]
39. oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
Ho Sui SJ; Fulton DL; Arenillas DJ; Kwon AT; Wasserman WW
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W245-52. PubMed ID: 17576675
[TBL] [Abstract][Full Text] [Related]
40. Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
Rajewsky N; Vergassola M; Gaul U; Siggia ED
BMC Bioinformatics; 2002 Oct; 3():30. PubMed ID: 12398796
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
