BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 15890272)

  • 1. Predicting oligomeric assemblies: N-mers a primer.
    Comeau SR; Camacho CJ
    J Struct Biol; 2005 Jun; 150(3):233-44. PubMed ID: 15890272
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
    Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10.
    Berchanski A; Segal D; Eisenstein M
    Proteins; 2005 Aug; 60(2):202-6. PubMed ID: 15981250
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.
    Camacho CJ
    Proteins; 2005 Aug; 60(2):245-51. PubMed ID: 15981253
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A new protein-protein docking scoring function based on interface residue properties.
    Bernauer J; Azé J; Janin J; Poupon A
    Bioinformatics; 2007 Mar; 23(5):555-62. PubMed ID: 17237048
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
    Wiehe K; Pierce B; Tong WW; Hwang H; Mintseris J; Weng Z
    Proteins; 2007 Dec; 69(4):719-25. PubMed ID: 17803212
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.
    Potluri S; Yan AK; Chou JJ; Donald BR; Bailey-Kellogg C
    Proteins; 2006 Oct; 65(1):203-19. PubMed ID: 16897780
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ClusPro: performance in CAPRI rounds 6-11 and the new server.
    Comeau SR; Kozakov D; Brenke R; Shen Y; Beglov D; Vajda S
    Proteins; 2007 Dec; 69(4):781-5. PubMed ID: 17876812
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Construction of molecular assemblies via docking: modeling of tetramers with D2 symmetry.
    Berchanski A; Eisenstein M
    Proteins; 2003 Dec; 53(4):817-29. PubMed ID: 14635124
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The targets of CAPRI rounds 6-12.
    Janin J
    Proteins; 2007 Dec; 69(4):699-703. PubMed ID: 17671980
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark.
    Kastritis PL; Bonvin AM
    J Proteome Res; 2010 May; 9(5):2216-25. PubMed ID: 20329755
    [TBL] [Abstract][Full Text] [Related]  

  • 17. M-ZDOCK: a grid-based approach for Cn symmetric multimer docking.
    Pierce B; Tong W; Weng Z
    Bioinformatics; 2005 Apr; 21(8):1472-8. PubMed ID: 15613396
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Geometry-based flexible and symmetric protein docking.
    Schneidman-Duhovny D; Inbar Y; Nussinov R; Wolfson HJ
    Proteins; 2005 Aug; 60(2):224-31. PubMed ID: 15981269
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.