349 related articles for article (PubMed ID: 15913459)
1. Do orthologous gene phylogenies really support tree-thinking?
Bapteste E; Susko E; Leigh J; MacLeod D; Charlebois RL; Doolittle WF
BMC Evol Biol; 2005 May; 5():33. PubMed ID: 15913459
[TBL] [Abstract][Full Text] [Related]
2. An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences.
Brochier C; Forterre P; Gribaldo S
BMC Evol Biol; 2005 Jun; 5():36. PubMed ID: 15932645
[TBL] [Abstract][Full Text] [Related]
3. Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales.
Fitzpatrick DA; Creevey CJ; McInerney JO
Mol Biol Evol; 2006 Jan; 23(1):74-85. PubMed ID: 16151187
[TBL] [Abstract][Full Text] [Related]
4. [Foundations of the new phylogenetics].
Pavlinov IIa
Zh Obshch Biol; 2004; 65(4):334-66. PubMed ID: 15490579
[TBL] [Abstract][Full Text] [Related]
5. Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny.
Bapteste E; Susko E; Leigh J; Ruiz-Trillo I; Bucknam J; Doolittle WF
Mol Biol Evol; 2008 Jan; 25(1):83-91. PubMed ID: 17940208
[TBL] [Abstract][Full Text] [Related]
6. The net of life: reconstructing the microbial phylogenetic network.
Kunin V; Goldovsky L; Darzentas N; Ouzounis CA
Genome Res; 2005 Jul; 15(7):954-9. PubMed ID: 15965028
[TBL] [Abstract][Full Text] [Related]
7. The effects of model choice and mitigating bias on the ribosomal tree of life.
Lasek-Nesselquist E; Gogarten JP
Mol Phylogenet Evol; 2013 Oct; 69(1):17-38. PubMed ID: 23707703
[TBL] [Abstract][Full Text] [Related]
8. Assessing the performance of single-copy genes for recovering robust phylogenies.
Aguileta G; Marthey S; Chiapello H; Lebrun MH; Rodolphe F; Fournier E; Gendrault-Jacquemard A; Giraud T
Syst Biol; 2008 Aug; 57(4):613-27. PubMed ID: 18709599
[TBL] [Abstract][Full Text] [Related]
9. A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study.
Li C; Ortí G; Zhang G; Lu G
BMC Evol Biol; 2007 Mar; 7():44. PubMed ID: 17374158
[TBL] [Abstract][Full Text] [Related]
10. [Reconstructing genes evolution along a species tree].
Gorbunov KIu; Liubetskiĭ VA
Mol Biol (Mosk); 2009; 43(5):946-58. PubMed ID: 19899641
[TBL] [Abstract][Full Text] [Related]
11. Bacterial molecular phylogeny using supertree approach.
Daubin V; Gouy M; Perrière G
Genome Inform; 2001; 12():155-64. PubMed ID: 11791234
[TBL] [Abstract][Full Text] [Related]
12. dnaJ is a useful phylogenetic marker for alphaproteobacteria.
Alexandre A; Laranjo M; Young JP; Oliveira S
Int J Syst Evol Microbiol; 2008 Dec; 58(Pt 12):2839-49. PubMed ID: 19060069
[TBL] [Abstract][Full Text] [Related]
13. Mosaics of convergences and noise in morphological phylogenies: what's in a viverrid-like carnivoran?
Gaubert P; Wozencraft WC; Cordeiro-Estrela P; Veron G
Syst Biol; 2005 Dec; 54(6):865-94. PubMed ID: 16282167
[TBL] [Abstract][Full Text] [Related]
14. A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.
Esser C; Ahmadinejad N; Wiegand C; Rotte C; Sebastiani F; Gelius-Dietrich G; Henze K; Kretschmann E; Richly E; Leister D; Bryant D; Steel MA; Lockhart PJ; Penny D; Martin W
Mol Biol Evol; 2004 Sep; 21(9):1643-60. PubMed ID: 15155797
[TBL] [Abstract][Full Text] [Related]
15. Phylogenetic identification of lateral genetic transfer events.
Beiko RG; Hamilton N
BMC Evol Biol; 2006 Feb; 6():15. PubMed ID: 16472400
[TBL] [Abstract][Full Text] [Related]
16. The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.
Ge F; Wang LS; Kim J
PLoS Biol; 2005 Oct; 3(10):e316. PubMed ID: 16122348
[TBL] [Abstract][Full Text] [Related]
17. Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the gamma-proteobacteria.
Susko E; Leigh J; Doolittle WF; Bapteste E
Mol Biol Evol; 2006 May; 23(5):1019-30. PubMed ID: 16495350
[TBL] [Abstract][Full Text] [Related]
18. Factors affecting the concordance between orthologous gene trees and species tree in bacteria.
Castillo-Ramírez S; González V
BMC Evol Biol; 2008 Oct; 8():300. PubMed ID: 18973688
[TBL] [Abstract][Full Text] [Related]
19. The tree of life viewed through the contents of genomes.
House CH
Methods Mol Biol; 2009; 532():141-61. PubMed ID: 19271183
[TBL] [Abstract][Full Text] [Related]
20. Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases.
Brindefalk B; Viklund J; Larsson D; Thollesson M; Andersson SG
Mol Biol Evol; 2007 Mar; 24(3):743-56. PubMed ID: 17182897
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]