These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
275 related articles for article (PubMed ID: 15922356)
1. Normal mode calculations of icosahedral viruses with full dihedral flexibility by use of molecular symmetry. van Vlijmen HW; Karplus M J Mol Biol; 2005 Jul; 350(3):528-42. PubMed ID: 15922356 [TBL] [Abstract][Full Text] [Related]
2. The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus. Tama F; Brooks CL J Mol Biol; 2002 May; 318(3):733-47. PubMed ID: 12054819 [TBL] [Abstract][Full Text] [Related]
3. Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis. Tama F; Brooks CL J Mol Biol; 2005 Jan; 345(2):299-314. PubMed ID: 15571723 [TBL] [Abstract][Full Text] [Related]
4. Structural transitions in Cowpea chlorotic mottle virus (CCMV). Liepold LO; Revis J; Allen M; Oltrogge L; Young M; Douglas T Phys Biol; 2005 Nov; 2(4):S166-72. PubMed ID: 16280622 [TBL] [Abstract][Full Text] [Related]
5. Domain motions and the open-to-closed conformational transition of an enzyme: a normal mode analysis of S-adenosyl-L-homocysteine hydrolase. Wang M; Borchardt RT; Schowen RL; Kuczera K Biochemistry; 2005 May; 44(19):7228-39. PubMed ID: 15882061 [TBL] [Abstract][Full Text] [Related]
6. Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH. van Vlijmen HW; Curry S; Schaefer M; Karplus M J Mol Biol; 1998 Jan; 275(2):295-308. PubMed ID: 9466910 [TBL] [Abstract][Full Text] [Related]
7. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone. Murarka RK; Liwo A; Scheraga HA J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219 [TBL] [Abstract][Full Text] [Related]
8. Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics. Mathiowetz AM; Jain A; Karasawa N; Goddard WA Proteins; 1994 Nov; 20(3):227-47. PubMed ID: 7892172 [TBL] [Abstract][Full Text] [Related]
9. Quasi-equivalent viruses: a paradigm for protein assemblies. Johnson JE; Speir JA J Mol Biol; 1997 Jun; 269(5):665-75. PubMed ID: 9223631 [TBL] [Abstract][Full Text] [Related]
10. ProMode: a database of normal mode analyses on protein molecules with a full-atom model. Wako H; Kato M; Endo S Bioinformatics; 2004 Sep; 20(13):2035-43. PubMed ID: 15059828 [TBL] [Abstract][Full Text] [Related]
11. Mechanism of capsid assembly for an icosahedral plant virus. Zlotnick A; Aldrich R; Johnson JM; Ceres P; Young MJ Virology; 2000 Nov; 277(2):450-6. PubMed ID: 11080492 [TBL] [Abstract][Full Text] [Related]
12. Group theory of icosahedral virus capsid vibrations: a top-down approach. Peeters K; Taormina A J Theor Biol; 2009 Feb; 256(4):607-24. PubMed ID: 19014954 [TBL] [Abstract][Full Text] [Related]
13. Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM. Tama F; Miyashita O; Brooks CL J Struct Biol; 2004 Sep; 147(3):315-26. PubMed ID: 15450300 [TBL] [Abstract][Full Text] [Related]
14. Influence of an antiviral compound on the temperature dependence of viral protein flexibility and packing: a molecular dynamics study. Phelps DK; Rossky PJ; Post CB J Mol Biol; 1998 Feb; 276(2):331-7. PubMed ID: 9512706 [TBL] [Abstract][Full Text] [Related]
15. Nanoindentation of virus capsids in a molecular model. Cieplak M; Robbins MO J Chem Phys; 2010 Jan; 132(1):015101. PubMed ID: 20078182 [TBL] [Abstract][Full Text] [Related]
16. Modelling the self-assembly of virus capsids. Johnston IG; Louis AA; Doye JP J Phys Condens Matter; 2010 Mar; 22(10):104101. PubMed ID: 21389435 [TBL] [Abstract][Full Text] [Related]
17. Investigation of a predicted N-terminal amphipathic α-helix using atomistic molecular dynamics simulation of a complete prototype poliovirus virion. Roberts JA; Kuiper MJ; Thorley BR; Smooker PM; Hung A J Mol Graph Model; 2012 Sep; 38():165-73. PubMed ID: 23085162 [TBL] [Abstract][Full Text] [Related]
18. Analysis of rapid, large-scale protein quaternary structural changes: time-resolved X-ray solution scattering of Nudaurelia capensis omega virus (NomegaV) maturation. Canady MA; Tsuruta H; Johnson JE J Mol Biol; 2001 Aug; 311(4):803-14. PubMed ID: 11518532 [TBL] [Abstract][Full Text] [Related]
19. The role of arginine-rich motif and beta-annulus in the assembly and stability of Sesbania mosaic virus capsids. Satheshkumar PS; Lokesh GL; Murthy MR; Savithri HS J Mol Biol; 2005 Oct; 353(2):447-58. PubMed ID: 16169007 [TBL] [Abstract][Full Text] [Related]