These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

659 related articles for article (PubMed ID: 15941488)

  • 1. PAGE: parametric analysis of gene set enrichment.
    Kim SY; Volsky DJ
    BMC Bioinformatics; 2005 Jun; 6():144. PubMed ID: 15941488
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.
    Maruschke M; Reuter D; Koczan D; Hakenberg OW; Thiesen HJ
    BJU Int; 2011 Jul; 108(2 Pt 2):E29-35. PubMed ID: 21435154
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
    Carter SL; Eklund AC; Mecham BH; Kohane IS; Szallasi Z
    BMC Bioinformatics; 2005 Apr; 6():107. PubMed ID: 15850491
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SEGS: search for enriched gene sets in microarray data.
    Trajkovski I; Lavrac N; Tolar J
    J Biomed Inform; 2008 Aug; 41(4):588-601. PubMed ID: 18234563
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets.
    Lai Y; Zhang F; Nayak TK; Modarres R; Lee NH; McCaffrey TA
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S6. PubMed ID: 24564564
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improving gene set analysis of microarray data by SAM-GS.
    Dinu I; Potter JD; Mueller T; Liu Q; Adewale AJ; Jhangri GS; Einecke G; Famulski KS; Halloran P; Yasui Y
    BMC Bioinformatics; 2007 Jul; 8():242. PubMed ID: 17612399
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses.
    Spinelli L; Carpentier S; Montañana Sanchis F; Dalod M; Vu Manh TP
    BMC Genomics; 2015 Oct; 16():814. PubMed ID: 26481321
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparative study of gene set enrichment methods.
    Abatangelo L; Maglietta R; Distaso A; D'Addabbo A; Creanza TM; Mukherjee S; Ancona N
    BMC Bioinformatics; 2009 Sep; 10():275. PubMed ID: 19725948
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computation of significance scores of unweighted Gene Set Enrichment Analyses.
    Keller A; Backes C; Lenhof HP
    BMC Bioinformatics; 2007 Aug; 8():290. PubMed ID: 17683603
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SLEPR: a sample-level enrichment-based pathway ranking method -- seeking biological themes through pathway-level consistency.
    Yi M; Stephens RM
    PLoS One; 2008 Sep; 3(9):e3288. PubMed ID: 18818771
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improving Gene-Set Enrichment Analysis of RNA-Seq Data with Small Replicates.
    Yoon S; Kim SY; Nam D
    PLoS One; 2016; 11(11):e0165919. PubMed ID: 27829002
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A rapid method for microarray cross platform comparisons using gene expression signatures.
    Cheadle C; Becker KG; Cho-Chung YS; Nesterova M; Watkins T; Wood W; Prabhu V; Barnes KC
    Mol Cell Probes; 2007 Feb; 21(1):35-46. PubMed ID: 16982174
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.
    Shedden K; Chen W; Kuick R; Ghosh D; Macdonald J; Cho KR; Giordano TJ; Gruber SB; Fearon ER; Taylor JM; Hanash S
    BMC Bioinformatics; 2005 Feb; 6():26. PubMed ID: 15705192
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detecting discordance enrichment among a series of two-sample genome-wide expression data sets.
    Lai Y; Zhang F; Nayak TK; Modarres R; Lee NH; McCaffrey TA
    BMC Genomics; 2017 Jan; 18(Suppl 1):1050. PubMed ID: 28198679
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Appearance frequency modulated gene set enrichment testing.
    Ma J; Sartor MA; Jagadish HV
    BMC Bioinformatics; 2011 Mar; 12():81. PubMed ID: 21418606
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identification of differentially expressed genes for time-course microarray data based on modified RM ANOVA.
    ElBakry O; Ahmad MO; Swamy MN
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):451-66. PubMed ID: 21464508
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.
    Jaksik R; Polańska J; Herok R; Rzeszowska-Wolny J
    Acta Biochim Pol; 2009; 56(2):271-7. PubMed ID: 19436837
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessment of gene set analysis methods based on microarray data.
    Alavi-Majd H; Khodakarim S; Zayeri F; Rezaei-Tavirani M; Tabatabaei SM; Heydarpour-Meymeh M
    Gene; 2014 Jan; 534(2):383-9. PubMed ID: 24012817
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.
    Galfalvy HC; Erraji-Benchekroun L; Smyrniotopoulos P; Pavlidis P; Ellis SP; Mann JJ; Sibille E; Arango V
    BMC Bioinformatics; 2003 Sep; 4():37. PubMed ID: 12962547
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Gene set enrichment analysis made simple.
    Irizarry RA; Wang C; Zhou Y; Speed TP
    Stat Methods Med Res; 2009 Dec; 18(6):565-75. PubMed ID: 20048385
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.