153 related articles for article (PubMed ID: 15944445)
1. A model-based approach for detecting coevolving positions in a molecule.
Dutheil J; Pupko T; Jean-Marie A; Galtier N
Mol Biol Evol; 2005 Sep; 22(9):1919-28. PubMed ID: 15944445
[TBL] [Abstract][Full Text] [Related]
2. Coevolving protein residues: maximum likelihood identification and relationship to structure.
Pollock DD; Taylor WR; Goldman N
J Mol Biol; 1999 Mar; 287(1):187-98. PubMed ID: 10074416
[TBL] [Abstract][Full Text] [Related]
3. A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model.
Gowri-Shankar V; Rattray M
Mol Biol Evol; 2007 Jun; 24(6):1286-99. PubMed ID: 17347157
[TBL] [Abstract][Full Text] [Related]
4. Base pairing constraints drive structural epistasis in ribosomal RNA sequences.
Dutheil JY; Jossinet F; Westhof E
Mol Biol Evol; 2010 Aug; 27(8):1868-76. PubMed ID: 20211929
[TBL] [Abstract][Full Text] [Related]
5. A Bayesian model comparison approach to inferring positive selection.
Scheffler K; Seoighe C
Mol Biol Evol; 2005 Dec; 22(12):2531-40. PubMed ID: 16120799
[TBL] [Abstract][Full Text] [Related]
6. Empirical models for substitution in ribosomal RNA.
Smith AD; Lui TW; Tillier ER
Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
[TBL] [Abstract][Full Text] [Related]
7. Detecting the coevolution of biosequences--an example of RNA interaction prediction.
Yeang CH; Darot JF; Noller HF; Haussler D
Mol Biol Evol; 2007 Sep; 24(9):2119-31. PubMed ID: 17636042
[TBL] [Abstract][Full Text] [Related]
8. Joint Bayesian estimation of alignment and phylogeny.
Redelings BD; Suchard MA
Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
[TBL] [Abstract][Full Text] [Related]
9. Empirical and hierarchical Bayesian estimation of ancestral states.
Huelsenbeck JP; Bollback JP
Syst Biol; 2001 Jun; 50(3):351-66. PubMed ID: 12116580
[TBL] [Abstract][Full Text] [Related]
10. Simulating DNA coding sequence evolution with EvolveAGene 3.
Hall BG
Mol Biol Evol; 2008 Apr; 25(4):688-95. PubMed ID: 18192698
[TBL] [Abstract][Full Text] [Related]
11. A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.
Baele G; Van de Peer Y; Vansteelandt S
Syst Biol; 2008 Oct; 57(5):675-92. PubMed ID: 18853356
[TBL] [Abstract][Full Text] [Related]
12. A basic limitation on inferring phylogenies by pairwise sequence comparisons.
Steel M
J Theor Biol; 2009 Feb; 256(3):467-72. PubMed ID: 19000697
[TBL] [Abstract][Full Text] [Related]
13. Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution.
Hwang DG; Green P
Proc Natl Acad Sci U S A; 2004 Sep; 101(39):13994-4001. PubMed ID: 15292512
[TBL] [Abstract][Full Text] [Related]
14. In silico sequence evolution with site-specific interactions along phylogenetic trees.
Gesell T; von Haeseler A
Bioinformatics; 2006 Mar; 22(6):716-22. PubMed ID: 16332711
[TBL] [Abstract][Full Text] [Related]
15. Bayesian estimation of ancestral character states on phylogenies.
Pagel M; Meade A; Barker D
Syst Biol; 2004 Oct; 53(5):673-84. PubMed ID: 15545248
[TBL] [Abstract][Full Text] [Related]
16. The influence of phylogenetic uncertainty on the detection of positive Darwinian selection.
Pie MR
Mol Biol Evol; 2006 Dec; 23(12):2274-8. PubMed ID: 16971694
[TBL] [Abstract][Full Text] [Related]
17. Phylogenetic methodology for detecting protein interactions.
Waddell PJ; Kishino H; Ota R
Mol Biol Evol; 2007 Mar; 24(3):650-9. PubMed ID: 17158779
[TBL] [Abstract][Full Text] [Related]
18. A gamma mixture model better accounts for among site rate heterogeneity.
Mayrose I; Friedman N; Pupko T
Bioinformatics; 2005 Sep; 21 Suppl 2():ii151-8. PubMed ID: 16204095
[TBL] [Abstract][Full Text] [Related]
19. Efficient selection of branch-specific models of sequence evolution.
Dutheil JY; Galtier N; Romiguier J; Douzery EJ; Ranwez V; Boussau B
Mol Biol Evol; 2012 Jul; 29(7):1861-74. PubMed ID: 22319139
[TBL] [Abstract][Full Text] [Related]
20. Continuous and tractable models for the variation of evolutionary rates.
Lepage T; Lawi S; Tupper P; Bryant D
Math Biosci; 2006 Feb; 199(2):216-33. PubMed ID: 16406009
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
