BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

493 related articles for article (PubMed ID: 15946678)

  • 1. CD4 binding partially locks the bridging sheet in gp120 but leaves the beta2/3 strands flexible.
    Pan Y; Ma B; Nussinov R
    J Mol Biol; 2005 Jul; 350(3):514-27. PubMed ID: 15946678
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Understanding of the bridging sheet formation of HIV-1 glycoprotein gp120.
    Da LT; Quan JM; Wu YD
    J Phys Chem B; 2009 Oct; 113(43):14536-43. PubMed ID: 19813706
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Atomic insight into the CD4 binding-induced conformational changes in HIV-1 gp120.
    Hsu ST; Bonvin AM
    Proteins; 2004 May; 55(3):582-93. PubMed ID: 15103622
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Spontaneous rearrangement of the β20/β21 strands in simulations of unliganded HIV-1 glycoprotein, gp120.
    Shrivastava IH; Wendel K; LaLonde JM
    Biochemistry; 2012 Oct; 51(39):7783-93. PubMed ID: 22963284
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular motions in HIV-1 gp120 mutants reveal their preferences for different conformations.
    Liu SQ; Liu CQ; Fu YX
    J Mol Graph Model; 2007 Jul; 26(1):306-18. PubMed ID: 17227719
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NMR studies on the conformation of the CD4 36-59 peptide bound to HIV-1 gp120.
    Gizachew D; Moffett DB; Busse SC; Westler WM; Dratz EA; Teintze M
    Biochemistry; 1998 Jul; 37(30):10616-25. PubMed ID: 9692951
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Characterization of the conformational state and flexibility of HIV-1 glycoprotein gp120 core domain.
    Pan Y; Ma B; Keskin O; Nussinov R
    J Biol Chem; 2004 Jul; 279(29):30523-30. PubMed ID: 15131118
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of putative, stable binding regions through flexibility analysis of HIV-1 gp120.
    Tan H; Rader AJ
    Proteins; 2009 Mar; 74(4):881-94. PubMed ID: 18704932
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Local conformational stability of HIV-1 gp120 in unliganded and CD4-bound states as defined by amide hydrogen/deuterium exchange.
    Kong L; Huang CC; Coales SJ; Molnar KS; Skinner J; Hamuro Y; Kwong PD
    J Virol; 2010 Oct; 84(19):10311-21. PubMed ID: 20660185
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Entropy calculation of HIV-1 Env gp120, its receptor CD4, and their complex: an analysis of configurational entropy changes upon complexation.
    Hsu ST; Peter C; van Gunsteren WF; Bonvin AM
    Biophys J; 2005 Jan; 88(1):15-24. PubMed ID: 15489307
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dynamics and stability of amyloid-like steric zipper assemblies with hydrophobic dry interfaces.
    Vitagliano L; Stanzione F; De Simone A; Esposito L
    Biopolymers; 2009 Dec; 91(12):1161-71. PubMed ID: 19280623
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Towards a structure of the HIV-1 envelope glycoprotein gp120: an immunochemical approach.
    Moore JP; Jameson BA; Sattentau QJ; Willey R; Sodroski J
    Philos Trans R Soc Lond B Biol Sci; 1993 Oct; 342(1299):83-8. PubMed ID: 7904352
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Role of the amino acid sequence in domain swapping of the B1 domain of protein G.
    Sirota FL; Héry-Huynh S; Maurer-Stroh S; Wodak SJ
    Proteins; 2008 Jul; 72(1):88-104. PubMed ID: 18186476
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth.
    Huang CC; Stricher F; Martin L; Decker JM; Majeed S; Barthe P; Hendrickson WA; Robinson J; Roumestand C; Sodroski J; Wyatt R; Shaw GM; Vita C; Kwong PD
    Structure; 2005 May; 13(5):755-68. PubMed ID: 15893666
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations of the periplasmic ferric-hydroxamate binding protein FhuD.
    Krewulak KD; Shepherd CM; Vogel HJ
    Biometals; 2005 Aug; 18(4):375-86. PubMed ID: 16158230
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conformational study of fragments of envelope proteins (gp120: 254-274 and gp41: 519-541) of HIV-1 by NMR and MD simulations.
    Kanyalkar M; Srivastava S; Saran A; Coutinho E
    J Pept Sci; 2004 Jun; 10(6):363-80. PubMed ID: 15214441
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural basis for the interaction between focal adhesion kinase and CD4.
    Garron ML; Arthos J; Guichou JF; McNally J; Cicala C; Arold ST
    J Mol Biol; 2008 Feb; 375(5):1320-8. PubMed ID: 18078954
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cooperative fluctuations of unliganded and substrate-bound HIV-1 protease: a structure-based analysis on a variety of conformations from crystallography and molecular dynamics simulations.
    Kurt N; Scott WR; Schiffer CA; Haliloglu T
    Proteins; 2003 May; 51(3):409-22. PubMed ID: 12696052
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Exploration of partially unfolded states of human alpha-lactalbumin by molecular dynamics simulation.
    Paci E; Smith LJ; Dobson CM; Karplus M
    J Mol Biol; 2001 Feb; 306(2):329-47. PubMed ID: 11237603
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.
    Kony DB; Hünenberger PH; van Gunsteren WF
    Protein Sci; 2007 Jun; 16(6):1101-18. PubMed ID: 17525462
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.