112 related articles for article (PubMed ID: 15961447)
1. ANOSVA: a statistical method for detecting splice variation from expression data.
Cline MS; Blume J; Cawley S; Clark TA; Hu JS; Lu G; Salomonis N; Wang H; Williams A
Bioinformatics; 2005 Jun; 21 Suppl 1():i107-15. PubMed ID: 15961447
[TBL] [Abstract][Full Text] [Related]
2. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
[TBL] [Abstract][Full Text] [Related]
3. Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
Gellert P; Uchida S; Braun T
Bioinformatics; 2009 Dec; 25(24):3323-4. PubMed ID: 19808879
[TBL] [Abstract][Full Text] [Related]
4. EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.
Bhasi A; Pandey RV; Utharasamy SP; Senapathy P
Bioinformatics; 2007 Jul; 23(14):1815-23. PubMed ID: 17344236
[TBL] [Abstract][Full Text] [Related]
5. RASE: recognition of alternatively spliced exons in C.elegans.
Rätsch G; Sonnenburg S; Schölkopf B
Bioinformatics; 2005 Jun; 21 Suppl 1():i369-77. PubMed ID: 15961480
[TBL] [Abstract][Full Text] [Related]
6. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
Gardina PJ; Clark TA; Shimada B; Staples MK; Yang Q; Veitch J; Schweitzer A; Awad T; Sugnet C; Dee S; Davies C; Williams A; Turpaz Y
BMC Genomics; 2006 Dec; 7():325. PubMed ID: 17192196
[TBL] [Abstract][Full Text] [Related]
7. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.
Yoshida R; Numata K; Imoto S; Nagasaki M; Doi A; Ueno K; Miyano S
Genome Inform; 2006; 17(1):88-99. PubMed ID: 17503359
[TBL] [Abstract][Full Text] [Related]
8. Sample size determination for the false discovery rate.
Pounds S; Cheng C
Bioinformatics; 2005 Dec; 21(23):4263-71. PubMed ID: 16204346
[TBL] [Abstract][Full Text] [Related]
9. Predicting splice variant from DNA chip expression data.
Hu GK; Madore SJ; Moldover B; Jatkoe T; Balaban D; Thomas J; Wang Y
Genome Res; 2001 Jul; 11(7):1237-45. PubMed ID: 11435406
[TBL] [Abstract][Full Text] [Related]
10. Efficient prediction of alternative splice forms using protein domain homology.
Hiller M; Backofen R; Heymann S; Busch A; Glaesser TM; Freytag JC
In Silico Biol; 2004; 4(2):195-208. PubMed ID: 15107023
[TBL] [Abstract][Full Text] [Related]
11. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
Rambaldi D; Felice B; Praz V; Bucher P; Cittaro D; Guffanti A
BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
[TBL] [Abstract][Full Text] [Related]
12. ASTD: The Alternative Splicing and Transcript Diversity database.
Koscielny G; Le Texier V; Gopalakrishnan C; Kumanduri V; Riethoven JJ; Nardone F; Stanley E; Fallsehr C; Hofmann O; Kull M; Harrington E; Boué S; Eyras E; Plass M; Lopez F; Ritchie W; Moucadel V; Ara T; Pospisil H; Herrmann A; G Reich J; Guigó R; Bork P; Doeberitz Mv; Vilo J; Hide W; Apweiler R; Thanaraj TA; Gautheret D
Genomics; 2009 Mar; 93(3):213-20. PubMed ID: 19059335
[TBL] [Abstract][Full Text] [Related]
13. Robust estimation of the false discovery rate.
Pounds S; Cheng C
Bioinformatics; 2006 Aug; 22(16):1979-87. PubMed ID: 16777905
[TBL] [Abstract][Full Text] [Related]
14. Detecting and profiling tissue-selective genes.
Liang S; Li Y; Be X; Howes S; Liu W
Physiol Genomics; 2006 Jul; 26(2):158-62. PubMed ID: 16684803
[TBL] [Abstract][Full Text] [Related]
15. Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.
Jaksik R; Polańska J; Herok R; Rzeszowska-Wolny J
Acta Biochim Pol; 2009; 56(2):271-7. PubMed ID: 19436837
[TBL] [Abstract][Full Text] [Related]
16. GO based tissue specific functions of mouse using countable gene expression profiles.
Takenaka Y; Matsumoto A; Matsuda H
Genome Inform; 2007; 19():154-65. PubMed ID: 18546513
[TBL] [Abstract][Full Text] [Related]
17. Pathway analysis using random forests classification and regression.
Pang H; Lin A; Holford M; Enerson BE; Lu B; Lawton MP; Floyd E; Zhao H
Bioinformatics; 2006 Aug; 22(16):2028-36. PubMed ID: 16809386
[TBL] [Abstract][Full Text] [Related]
18. ADGO: analysis of differentially expressed gene sets using composite GO annotation.
Nam D; Kim SB; Kim SK; Yang S; Kim SY; Chu IS
Bioinformatics; 2006 Sep; 22(18):2249-53. PubMed ID: 16837524
[TBL] [Abstract][Full Text] [Related]
19. A distribution free summarization method for Affymetrix GeneChip arrays.
Chen Z; McGee M; Liu Q; Scheuermann RH
Bioinformatics; 2007 Feb; 23(3):321-7. PubMed ID: 17148508
[TBL] [Abstract][Full Text] [Related]
20. Robustified MANOVA with applications in detecting differentially expressed genes from oligonucleotide arrays.
Xu J; Cui X
Bioinformatics; 2008 Apr; 24(8):1056-62. PubMed ID: 18316342
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]