193 related articles for article (PubMed ID: 15961501)
1. Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms.
Cheng J; Baldi P
Bioinformatics; 2005 Jun; 21 Suppl 1():i75-84. PubMed ID: 15961501
[TBL] [Abstract][Full Text] [Related]
2. Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching.
Cheng J; Saigo H; Baldi P
Proteins; 2006 Mar; 62(3):617-29. PubMed ID: 16320312
[TBL] [Abstract][Full Text] [Related]
3. Contributions of residue pairing to beta-sheet formation: conservation and covariation of amino acid residue pairs on antiparallel beta-strands.
Mandel-Gutfreund Y; Zaremba SM; Gregoret LM
J Mol Biol; 2001 Feb; 305(5):1145-59. PubMed ID: 11162120
[TBL] [Abstract][Full Text] [Related]
4. BuildBeta--a system for automatically constructing beta sheets.
Max N; Hu C; Kreylos O; Crivelli S
Proteins; 2010 Feb; 78(3):559-74. PubMed ID: 19768785
[TBL] [Abstract][Full Text] [Related]
5. ICBS: a database of interactions between protein chains mediated by beta-sheet formation.
Dou Y; Baisnée PF; Pollastri G; Pécout Y; Nowick J; Baldi P
Bioinformatics; 2004 Nov; 20(16):2767-77. PubMed ID: 15166020
[TBL] [Abstract][Full Text] [Related]
6. Prediction of strand pairing in antiparallel and parallel beta-sheets using information theory.
Steward RE; Thornton JM
Proteins; 2002 Aug; 48(2):178-91. PubMed ID: 12112687
[TBL] [Abstract][Full Text] [Related]
7. Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.
Kuhn M; Meiler J; Baker D
Proteins; 2004 Feb; 54(2):282-8. PubMed ID: 14696190
[TBL] [Abstract][Full Text] [Related]
8. TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins.
Randall A; Cheng J; Sweredoski M; Baldi P
Bioinformatics; 2008 Feb; 24(4):513-20. PubMed ID: 18006547
[TBL] [Abstract][Full Text] [Related]
9. Protein function prediction via graph kernels.
Borgwardt KM; Ong CS; Schönauer S; Vishwanathan SV; Smola AJ; Kriegel HP
Bioinformatics; 2005 Jun; 21 Suppl 1():i47-56. PubMed ID: 15961493
[TBL] [Abstract][Full Text] [Related]
10. Prediction of beta-sheet topology and disulfide bridges in polypeptides.
Klepeis JL; Floudas CA
J Comput Chem; 2003 Jan; 24(2):191-208. PubMed ID: 12497599
[TBL] [Abstract][Full Text] [Related]
11. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
Barenboim M; Masso M; Vaisman II; Jamison DC
Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470
[TBL] [Abstract][Full Text] [Related]
12. An introduction to protein contact prediction.
Hamilton N; Huber T
Methods Mol Biol; 2008; 453():87-104. PubMed ID: 18712298
[TBL] [Abstract][Full Text] [Related]
13. Beta-sheet capping: signals that initiate and terminate beta-sheet formation.
Farzadfard F; Gharaei N; Pezeshk H; Marashi SA
J Struct Biol; 2008 Jan; 161(1):101-10. PubMed ID: 18006332
[TBL] [Abstract][Full Text] [Related]
14. Pcons5: combining consensus, structural evaluation and fold recognition scores.
Wallner B; Elofsson A
Bioinformatics; 2005 Dec; 21(23):4248-54. PubMed ID: 16204344
[TBL] [Abstract][Full Text] [Related]
15. Distributions of beta sheets in proteins with application to structure prediction.
Ruczinski I; Kooperberg C; Bonneau R; Baker D
Proteins; 2002 Jul; 48(1):85-97. PubMed ID: 12012340
[TBL] [Abstract][Full Text] [Related]
16. Interstrand pairing patterns in beta-barrel membrane proteins: the positive-outside rule, aromatic rescue, and strand registration prediction.
Jackups R; Liang J
J Mol Biol; 2005 Dec; 354(4):979-93. PubMed ID: 16277990
[TBL] [Abstract][Full Text] [Related]
17. Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training.
Dor O; Zhou Y
Proteins; 2007 Mar; 66(4):838-45. PubMed ID: 17177203
[TBL] [Abstract][Full Text] [Related]
18. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
19. A machine learning information retrieval approach to protein fold recognition.
Cheng J; Baldi P
Bioinformatics; 2006 Jun; 22(12):1456-63. PubMed ID: 16547073
[TBL] [Abstract][Full Text] [Related]
20. Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development.
Parthiban V; Gromiha MM; Abhinandan M; Schomburg D
BMC Struct Biol; 2007 Aug; 7():54. PubMed ID: 17705837
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]