104 related articles for article (PubMed ID: 15980470)
1. One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries.
Frenkel-Morgenstern M; Singer A; Bronfeld H; Pietrokovski S
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W281-3. PubMed ID: 15980470
[TBL] [Abstract][Full Text] [Related]
2. Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
Frenkel-Morgenstern M; Voet H; Pietrokovski S
Bioinformatics; 2005 Jul; 21(13):2950-6. PubMed ID: 15870168
[TBL] [Abstract][Full Text] [Related]
3. Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.
Armougom F; Moretti S; Poirot O; Audic S; Dumas P; Schaeli B; Keduas V; Notredame C
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W604-8. PubMed ID: 16845081
[TBL] [Abstract][Full Text] [Related]
4. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
Suyama M; Torrents D; Bork P
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W609-12. PubMed ID: 16845082
[TBL] [Abstract][Full Text] [Related]
5. PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.
Moretti S; Reinier F; Poirot O; Armougom F; Audic S; Keduas V; Notredame C
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W600-3. PubMed ID: 16845080
[TBL] [Abstract][Full Text] [Related]
6. Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
Oliver T; Schmidt B; Nathan D; Clemens R; Maskell D
Bioinformatics; 2005 Aug; 21(16):3431-2. PubMed ID: 15919726
[TBL] [Abstract][Full Text] [Related]
7. BiasViz: visualization of amino acid biased regions in protein alignments.
Huska MR; Buschmann H; Andrade-Navarro MA
Bioinformatics; 2007 Nov; 23(22):3093-4. PubMed ID: 17921493
[TBL] [Abstract][Full Text] [Related]
8. DMAPS: a database of multiple alignments for protein structures.
Guda C; Pal LR; Shindyalov IN
Nucleic Acids Res; 2006 Jan; 34(Database issue):D273-6. PubMed ID: 16381863
[TBL] [Abstract][Full Text] [Related]
9. FCP: functional coverage of the proteome by structures.
García-Serna R; Opatowski L; Mestres J
Bioinformatics; 2006 Jul; 22(14):1792-3. PubMed ID: 16705012
[TBL] [Abstract][Full Text] [Related]
10. GOAnno: GO annotation based on multiple alignment.
Chalmel F; Lardenois A; Thompson JD; Muller J; Sahel JA; Léveillard T; Poch O
Bioinformatics; 2005 May; 21(9):2095-6. PubMed ID: 15647299
[TBL] [Abstract][Full Text] [Related]
11. Multiple Alignment of protein structures and sequences for VMD.
Eargle J; Wright D; Luthey-Schulten Z
Bioinformatics; 2006 Feb; 22(4):504-6. PubMed ID: 16339280
[TBL] [Abstract][Full Text] [Related]
12. An iterative refinement algorithm for consistency based multiple structural alignment methods.
Chen Y; Crippen GM
Bioinformatics; 2006 Sep; 22(17):2087-93. PubMed ID: 16809393
[TBL] [Abstract][Full Text] [Related]
13. An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.
Ye K; Kosters WA; Ijzerman AP
Bioinformatics; 2007 Mar; 23(6):687-93. PubMed ID: 17237070
[TBL] [Abstract][Full Text] [Related]
14. The SYSTERS Protein Family Database in 2005.
Meinel T; Krause A; Luz H; Vingron M; Staub E
Nucleic Acids Res; 2005 Jan; 33(Database issue):D226-9. PubMed ID: 15608183
[TBL] [Abstract][Full Text] [Related]
15. Multiple alignment by sequence annealing.
Schwartz AS; Pachter L
Bioinformatics; 2007 Jan; 23(2):e24-9. PubMed ID: 17237099
[TBL] [Abstract][Full Text] [Related]
16. SIMAP--the similarity matrix of proteins.
Arnold R; Rattei T; Tischler P; Truong MD; Stümpflen V; Mewes W
Bioinformatics; 2005 Sep; 21 Suppl 2():ii42-6. PubMed ID: 16204123
[TBL] [Abstract][Full Text] [Related]
17. HMM-Kalign: a tool for generating sub-optimal HMM alignments.
Becker E; Cotillard A; Meyer V; Madaoui H; Guérois R
Bioinformatics; 2007 Nov; 23(22):3095-7. PubMed ID: 17921492
[TBL] [Abstract][Full Text] [Related]
18. UniProtJAPI: a remote API for accessing UniProt data.
Patient S; Wieser D; Kleen M; Kretschmann E; Jesus Martin M; Apweiler R
Bioinformatics; 2008 May; 24(10):1321-2. PubMed ID: 18390879
[TBL] [Abstract][Full Text] [Related]
19. LGICdb: a manually curated sequence database after the genomes.
Donizelli M; Djite MA; Le Novère N
Nucleic Acids Res; 2006 Jan; 34(Database issue):D267-9. PubMed ID: 16381861
[TBL] [Abstract][Full Text] [Related]
20. Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Lassmann T; Sonnhammer EL
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W596-9. PubMed ID: 16845078
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
