117 related articles for article (PubMed ID: 15980499)
1. Identifying synonymous regulatory elements in vertebrate genomes.
Ovcharenko I; Nobrega MA
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W403-7. PubMed ID: 15980499
[TBL] [Abstract][Full Text] [Related]
2. Dcode.org anthology of comparative genomic tools.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
[TBL] [Abstract][Full Text] [Related]
3. CREME: Cis-Regulatory Module Explorer for the human genome.
Sharan R; Ben-Hur A; Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W253-6. PubMed ID: 15215390
[TBL] [Abstract][Full Text] [Related]
4. ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Ovcharenko I; Nobrega MA; Loots GG; Stubbs L
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W280-6. PubMed ID: 15215395
[TBL] [Abstract][Full Text] [Related]
5. ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
Loots G; Ovcharenko I
Bioinformatics; 2007 Jan; 23(1):122-4. PubMed ID: 17090579
[TBL] [Abstract][Full Text] [Related]
6. Predicting transcription factor binding sites using local over-representation and comparative genomics.
Defrance M; Touzet H
BMC Bioinformatics; 2006 Aug; 7():396. PubMed ID: 16945132
[TBL] [Abstract][Full Text] [Related]
7. rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W217-21. PubMed ID: 15215384
[TBL] [Abstract][Full Text] [Related]
8. iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species.
Ranjan S; Seshadri J; Vindal V; Yellaboina S; Ranjan A
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W584-7. PubMed ID: 16845075
[TBL] [Abstract][Full Text] [Related]
9. A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas.
Stepanova M; Tiazhelova T; Skoblov M; Baranova A
Bioinformatics; 2005 May; 21(9):1789-96. PubMed ID: 15699025
[TBL] [Abstract][Full Text] [Related]
10. FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
Al-Shahrour F; Minguez P; Tárraga J; Medina I; Alloza E; Montaner D; Dopazo J
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W91-6. PubMed ID: 17478504
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
Kim SY; Kim Y
BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
[TBL] [Abstract][Full Text] [Related]
12. Integrating genomic data to predict transcription factor binding.
Holloway DT; Kon M; DeLisi C
Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
[TBL] [Abstract][Full Text] [Related]
13. Discovery of regulatory elements in vertebrates through comparative genomics.
Prakash A; Tompa M
Nat Biotechnol; 2005 Oct; 23(10):1249-56. PubMed ID: 16211068
[TBL] [Abstract][Full Text] [Related]
14. Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals.
Nelander S; Larsson E; Kristiansson E; Månsson R; Nerman O; Sigvardsson M; Mostad P; Lindahl P
BMC Genomics; 2005 May; 6():68. PubMed ID: 15882449
[TBL] [Abstract][Full Text] [Related]
15. Array2BIO: from microarray expression data to functional annotation of co-regulated genes.
Loots GG; Chain PS; Mabery S; Rasley A; Garcia E; Ovcharenko I
BMC Bioinformatics; 2006 Jun; 7():307. PubMed ID: 16780584
[TBL] [Abstract][Full Text] [Related]
16. GenColors: annotation and comparative genomics of prokaryotes made easy.
Romualdi A; Felder M; Rose D; Gausmann U; Schilhabel M; Glöckner G; Platzer M; Sühnel J
Methods Mol Biol; 2007; 395():75-96. PubMed ID: 17993668
[TBL] [Abstract][Full Text] [Related]
17. PromAn: an integrated knowledge-based web server dedicated to promoter analysis.
Lardenois A; Chalmel F; Bianchetti L; Sahel JA; Léveillard T; Poch O
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W578-83. PubMed ID: 16845074
[TBL] [Abstract][Full Text] [Related]
18. Boundaries in vertebrate genomes: different solutions to adequately insulate gene expression domains.
Moltó E; Fernández A; Montoliu L
Brief Funct Genomic Proteomic; 2009 Jul; 8(4):283-96. PubMed ID: 19752046
[TBL] [Abstract][Full Text] [Related]
19. Transposable elements in gene regulation and in the evolution of vertebrate genomes.
Bourque G
Curr Opin Genet Dev; 2009 Dec; 19(6):607-12. PubMed ID: 19914058
[TBL] [Abstract][Full Text] [Related]
20. CRSD: a comprehensive web server for composite regulatory signature discovery.
Liu CC; Lin CC; Chen WS; Chen HY; Chang PC; Chen JJ; Yang PC
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W571-7. PubMed ID: 16845073
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]